Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20093
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49909-13|CAA90115.2|  215|Caenorhabditis elegans Hypothetical p...    67   1e-11
U53335-7|AAA96172.2|  150|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical pr...    29   4.0  

>Z49909-13|CAA90115.2|  215|Caenorhabditis elegans Hypothetical
           protein C14A4.11 protein.
          Length = 215

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 34/66 (51%), Positives = 41/66 (62%)
 Frame = +2

Query: 11  NEVSTYTPGPGKQVLEQRKREFVKYSKRFSTTLKEYFKEGQANAVFVSALYLIHQTNQIL 190
           N V    P   +  +E+RKREFV YSKRFS TLK YFK+  AN V VSA  L+ QT  I+
Sbjct: 146 NAVYRIVPLTAQPAVEKRKREFVHYSKRFSNTLKTYFKDQNANQVSVSANQLVFQTTMIV 205

Query: 191 YTVKSK 208
            T+  K
Sbjct: 206 RTINEK 211


>U53335-7|AAA96172.2|  150|Caenorhabditis elegans Hypothetical
           protein C55C3.2 protein.
          Length = 150

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 23/78 (29%), Positives = 35/78 (44%)
 Frame = -1

Query: 244 STSISIFHILLSLALYCIQYLICLMNQIKSAHKNSICLSFFKVFFESSRKSL*IFYKFSF 65
           S SIS+F   +   + C+ +L+ L    K   K    +S     F    K+   FYK SF
Sbjct: 69  SVSISVFRPAIIFLVTCLDFLVLLGLVYKKTCKPRGYMSLETTGFFVIDKN---FYKISF 125

Query: 64  PLF*YLLPRTWSICRYLI 11
                 +PRT S  R+++
Sbjct: 126 NQKAINIPRTCSSLRFVV 143


>Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical protein
            F21G4.6 protein.
          Length = 1885

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 461  HQDNYSSNIKSAFLFIIKNSIFPIPLNILKC 369
            H   +S  + + F   I NS+F IPL  +KC
Sbjct: 1289 HSKRFSKTLSACFRHPILNSMFNIPLVAMKC 1319


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,002,257
Number of Sequences: 27780
Number of extensions: 265385
Number of successful extensions: 638
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)