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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20024
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83236-1|CAB05777.1|  445|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen...    28   5.3  
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen...    28   5.3  
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ...    28   5.3  
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ...    28   5.3  
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll...    28   5.3  
Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr...    27   7.0  
L10990-4|ABB88238.1|  438|Caenorhabditis elegans Hypothetical pr...    27   9.2  
L10990-3|ABB88237.1|  505|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>Z83236-1|CAB05777.1|  445|Caenorhabditis elegans Hypothetical
           protein K10H10.1 protein.
          Length = 445

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 357 TPAPTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPT 476
           +P P+ P G +  H AF   +    T   SY     W+P+
Sbjct: 241 SPCPSVPWGTLFRHPAFWAAAVAQYTGGNSYSILFNWLPS 280


>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
           protein.
          Length = 1759

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
 Frame = -2

Query: 409 PNAPCGVTWPRGAVGAGVIPG*DIAAG----CCPRLYPGWNEC 293
           P  P G+   RGAVG    PG D   G      P   PGW+ C
Sbjct: 82  PPGPVGIKGDRGAVGVPGFPGNDGGNGRPGEPGPPGAPGWDGC 124


>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
           protein.
          Length = 1758

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
 Frame = -2

Query: 409 PNAPCGVTWPRGAVGAGVIPG*DIAAG----CCPRLYPGWNEC 293
           P  P G+   RGAVG    PG D   G      P   PGW+ C
Sbjct: 82  PPGPVGIKGDRGAVGVPGFPGNDGGNGRPGEPGPPGAPGWDGC 124


>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
           isoform a protein.
          Length = 1758

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
 Frame = -2

Query: 409 PNAPCGVTWPRGAVGAGVIPG*DIAAG----CCPRLYPGWNEC 293
           P  P G+   RGAVG    PG D   G      P   PGW+ C
Sbjct: 82  PPGPVGIKGDRGAVGVPGFPGNDGGNGRPGEPGPPGAPGWDGC 124


>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
           isoform b protein.
          Length = 1759

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
 Frame = -2

Query: 409 PNAPCGVTWPRGAVGAGVIPG*DIAAG----CCPRLYPGWNEC 293
           P  P G+   RGAVG    PG D   G      P   PGW+ C
Sbjct: 82  PPGPVGIKGDRGAVGVPGFPGNDGGNGRPGEPGPPGAPGWDGC 124


>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
           collagen protein.
          Length = 1795

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
 Frame = -2

Query: 409 PNAPCGVTWPRGAVGAGVIPG*DIAAG----CCPRLYPGWNEC 293
           P  P G+   RGAVG    PG D   G      P   PGW+ C
Sbjct: 82  PPGPVGIKGDRGAVGVPGFPGNDGGNGRPGEPGPPGAPGWDGC 124


>Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical
           protein DY3.5 protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +3

Query: 360 PAPTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTPQNASILS 503
           P PT P   + P  +   +S P  +PT    T     P TPQN ++ S
Sbjct: 621 PPPTRPASVIAPSSSVVPKSQPRPSPTTRPPTRATIRP-TPQNKAVTS 667


>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
           protein F12F6.6 protein.
          Length = 1126

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 309 GYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGY 413
           GY  G   A  +YPG    P AP   + P G  G+
Sbjct: 199 GYPGGPSSAPSAYPGAPQVPQAPNSFIPP-GTGGF 232


>L10990-4|ABB88238.1|  438|Caenorhabditis elegans Hypothetical
           protein C30A5.10b protein.
          Length = 438

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 23/95 (24%), Positives = 41/95 (43%)
 Frame = +2

Query: 161 IHTETQIIPHPKDQFTHRSTILQMLHLLASLSTTKLSCAWL*CSTFIPTRV*SRTTTCSN 340
           I+  T I  +P + F        M ++ +S ++T    ++   STF  T   S TT+ + 
Sbjct: 48  INPYTDIFVNPPNSFVD----FPMANIASSAASTISFQSYQNPSTFPSTTTASTTTSTTT 103

Query: 341 VLPRNHASTNCTSRPCDTTWCIWLSKLSLCDTNPE 445
           + P    +T    +  +T W    S + L   NP+
Sbjct: 104 MPPTYQTTTKSVKKNTETLWTTSKSPMKL-SKNPK 137


>L10990-3|ABB88237.1|  505|Caenorhabditis elegans Hypothetical
           protein C30A5.10a protein.
          Length = 505

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 23/95 (24%), Positives = 41/95 (43%)
 Frame = +2

Query: 161 IHTETQIIPHPKDQFTHRSTILQMLHLLASLSTTKLSCAWL*CSTFIPTRV*SRTTTCSN 340
           I+  T I  +P + F        M ++ +S ++T    ++   STF  T   S TT+ + 
Sbjct: 48  INPYTDIFVNPPNSFVD----FPMANIASSAASTISFQSYQNPSTFPSTTTASTTTSTTT 103

Query: 341 VLPRNHASTNCTSRPCDTTWCIWLSKLSLCDTNPE 445
           + P    +T    +  +T W    S + L   NP+
Sbjct: 104 MPPTYQTTTKSVKKNTETLWTTSKSPMKL-SKNPK 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,486,484
Number of Sequences: 27780
Number of extensions: 293302
Number of successful extensions: 1106
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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