Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00004
         (783 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81049-1|CAB61001.2|  503|Caenorhabditis elegans Hypothetical pr...    38   0.011
L29052-1|AAA27982.2|  503|Caenorhabditis elegans cell death prot...    38   0.011
AF210702-1|AAG42045.1|  503|Caenorhabditis elegans caspase CED-3...    38   0.011
AF088289-1|AAC98296.1|  263|Caenorhabditis elegans caspase-relat...    31   0.70 
AF088288-1|AAC98295.1|  826|Caenorhabditis elegans caspase-relat...    31   0.70 
AC084197-7|AAM44398.1|  826|Caenorhabditis elegans Caspase prote...    31   0.70 
Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical pr...    30   1.6  
EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient rec...    30   1.6  
AF016685-10|AAG24143.2|  195|Caenorhabditis elegans Hypothetical...    30   2.1  
AF098991-1|AAC67449.2|  758|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical p...    28   8.7  
U40802-5|AAK19011.2|  339|Caenorhabditis elegans Hypothetical pr...    28   8.7  

>Z81049-1|CAB61001.2|  503|Caenorhabditis elegans Hypothetical
           protein C48D1.2 protein.
          Length = 503

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 16/37 (43%), Positives = 24/37 (64%)
 Frame = +3

Query: 48  ADKCPTLAGKPKLFFIQACQGDKLDGGITLSNTETDG 158
           A   P LA KPK+ F+QAC+G++ D G  + ++  DG
Sbjct: 340 AANAPRLANKPKIVFVQACRGERRDNGFPVLDS-VDG 375



 Score = 35.9 bits (79), Expect = 0.033
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = +2

Query: 257 SWFMQSLCEELRNYGTQRDILTLLTFVCQRVALDFESN 370
           SWF+Q++CE    +    D++ LLT V ++VA  F+++
Sbjct: 435 SWFIQAVCEVFSTHAKDMDVVELLTEVNKKVACGFQTS 472


>L29052-1|AAA27982.2|  503|Caenorhabditis elegans cell death protein
           protein.
          Length = 503

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 16/37 (43%), Positives = 24/37 (64%)
 Frame = +3

Query: 48  ADKCPTLAGKPKLFFIQACQGDKLDGGITLSNTETDG 158
           A   P LA KPK+ F+QAC+G++ D G  + ++  DG
Sbjct: 340 AANAPRLANKPKIVFVQACRGERRDNGFPVLDS-VDG 375



 Score = 35.9 bits (79), Expect = 0.033
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = +2

Query: 257 SWFMQSLCEELRNYGTQRDILTLLTFVCQRVALDFESN 370
           SWF+Q++CE    +    D++ LLT V ++VA  F+++
Sbjct: 435 SWFIQAVCEVFSTHAKDMDVVELLTEVNKKVACGFQTS 472


>AF210702-1|AAG42045.1|  503|Caenorhabditis elegans caspase CED-3
           protein.
          Length = 503

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 16/37 (43%), Positives = 24/37 (64%)
 Frame = +3

Query: 48  ADKCPTLAGKPKLFFIQACQGDKLDGGITLSNTETDG 158
           A   P LA KPK+ F+QAC+G++ D G  + ++  DG
Sbjct: 340 AANAPRLANKPKIVFVQACRGERRDNGFPVLDS-VDG 375



 Score = 35.9 bits (79), Expect = 0.033
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = +2

Query: 257 SWFMQSLCEELRNYGTQRDILTLLTFVCQRVALDFESN 370
           SWF+Q++CE    +    D++ LLT V ++VA  F+++
Sbjct: 435 SWFIQAVCEVFSTHAKDMDVVELLTEVNKKVACGFQTS 472


>AF088289-1|AAC98296.1|  263|Caenorhabditis elegans caspase-related
           protein 2B protein.
          Length = 263

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
 Frame = +3

Query: 63  TLAGKPKLFFIQACQGDKLDGGIT----LSNTETDGXXXXXY---RIPIH------ADFL 203
           +LA KPK      C+GD++D  +     + N          +   + P H      AD L
Sbjct: 124 SLAKKPKWLMCVCCRGDRIDRAVRCDGFIDNFFDRFPKFFQFMKSKFPSHQTSSSQADLL 183

Query: 204 IVFSTVPGYYSWRNTTR 254
           + FST PG+ S+R+ T+
Sbjct: 184 VSFSTSPGFLSFRDETK 200


>AF088288-1|AAC98295.1|  826|Caenorhabditis elegans caspase-related
           protein 2A protein.
          Length = 826

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
 Frame = +3

Query: 63  TLAGKPKLFFIQACQGDKLDGGIT----LSNTETDGXXXXXY---RIPIH------ADFL 203
           +LA KPK      C+GD++D  +     + N          +   + P H      AD L
Sbjct: 687 SLAKKPKWLMCVCCRGDRIDRAVRCDGFIDNFFDRFPKFFQFMKSKFPSHQTSSSQADLL 746

Query: 204 IVFSTVPGYYSWRNTTR 254
           + FST PG+ S+R+ T+
Sbjct: 747 VSFSTSPGFLSFRDETK 763


>AC084197-7|AAM44398.1|  826|Caenorhabditis elegans Caspase protein
           2 protein.
          Length = 826

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
 Frame = +3

Query: 63  TLAGKPKLFFIQACQGDKLDGGIT----LSNTETDGXXXXXY---RIPIH------ADFL 203
           +LA KPK      C+GD++D  +     + N          +   + P H      AD L
Sbjct: 687 SLAKKPKWLMCVCCRGDRIDRAVRCDGFIDNFFDRFPKFFQFMKSKFPSHQTSSSQADLL 746

Query: 204 IVFSTVPGYYSWRNTTR 254
           + FST PG+ S+R+ T+
Sbjct: 747 VSFSTSPGFLSFRDETK 763


>Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical
           protein C29E6.2 protein.
          Length = 1193

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +2

Query: 224 RLLLLEKHNSCSWFMQSLCEELRNYGTQRDILTLLTFVCQRVALDFESNTPDITPMHQQK 403
           ++L +EK NSC W  +   +EL ++  ++  L +L  + +      E N     P+H   
Sbjct: 278 KILQMEKKNSCKWMDRE--KELIHFAAEKGFLEVLKALVEAGGNKNELNEVKAVPLHVAA 335

Query: 404 QV 409
           Q+
Sbjct: 336 QM 337


>EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient
           receptor potential subfamilyA-1 protein.
          Length = 1206

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +2

Query: 224 RLLLLEKHNSCSWFMQSLCEELRNYGTQRDILTLLTFVCQRVALDFESNTPDITPMHQQK 403
           ++L +EK NSC W  +   +EL ++  ++  L +L  + +      E N     P+H   
Sbjct: 296 KILQMEKKNSCKWMDRE--KELIHFAAEKGFLEVLKALVEAGGNKNELNEVKAVPLHVAA 353

Query: 404 QV 409
           Q+
Sbjct: 354 QM 355


>AF016685-10|AAG24143.2|  195|Caenorhabditis elegans Hypothetical
           protein F59E11.7a protein.
          Length = 195

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = -3

Query: 463 KLFFSK-QEKACQHTIYARYLFLLMHRCDIWCI*LKI*SNSLTNKCQECKNISLSTIVSQ 287
           KLF  + +EKAC HT++  +      +C  W            N  QEC    +STI   
Sbjct: 123 KLFDKRNEEKACLHTLFNDFHGTSKEKCLKW------------NDIQECIKTQISTICGD 170

Query: 286 FFTKRLHKPRARV 248
             T+R  K  A +
Sbjct: 171 DMTRRYEKEAANL 183


>AF098991-1|AAC67449.2|  758|Caenorhabditis elegans Hypothetical
           protein F59H5.1 protein.
          Length = 758

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 467 YQVIFFQTREGVSAYYLCKVPVFVDASV*YLV 372
           Y+V+     E V  YY C++PV  DA   +LV
Sbjct: 144 YKVLGLTPEEKVDLYYACEMPVVTDAEKQWLV 175


>Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical
           protein F55H12.1 protein.
          Length = 768

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 343 LTNKCQECKNISLSTIVSQFFTKRLHKPRA 254
           +  KCQ+  N+S+     QFF+K + +P A
Sbjct: 280 INGKCQDATNMSVEVGTEQFFSKSVIRPSA 309


>U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical
            protein C32E8.11 protein.
          Length = 1927

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 291  LNSSQRDCINQEHELCFSKSNNL 223
            LN+ QRDC++    LC S S+N+
Sbjct: 1520 LNTRQRDCLSAMARLCASLSHNM 1542


>U40802-5|AAK19011.2|  339|Caenorhabditis elegans Hypothetical
           protein ZC477.5 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 325 ECKNISLSTIVSQFFTKRLHKPRARVVFLQ 236
           ECKNI+L    S   T+RL   R R  +LQ
Sbjct: 17  ECKNITLEKFCSNRLTERLKCERMRNQYLQ 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,337,595
Number of Sequences: 27780
Number of extensions: 365543
Number of successful extensions: 845
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)