Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0028
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical ... 33 0.12
AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical ... 33 0.12
Z81567-5|CAB04588.2| 154|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z83108-2|CAB05510.1| 820|Caenorhabditis elegans Hypothetical pr... 29 3.3
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 28 5.8
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 28 5.8
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 28 5.8
U41535-14|AAB63404.1| 169|Caenorhabditis elegans Hypothetical p... 27 7.7
U39644-7|AAO44908.1| 307|Caenorhabditis elegans Collagen protei... 27 7.7
>AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical
protein Y59A8B.9 protein.
Length = 187
Score = 33.5 bits (73), Expect = 0.12
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -3
Query: 224 GPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPA 93
GPA GA +PSR + +P +T R P+ TP+ P + +P+
Sbjct: 14 GPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPS 57
>AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical
protein Y59A8B.7 protein.
Length = 316
Score = 33.5 bits (73), Expect = 0.12
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -3
Query: 224 GPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPA 93
GPA GA +PSR + +P +T R P+ TP+ P + +P+
Sbjct: 143 GPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPS 186
>Z81567-5|CAB04588.2| 154|Caenorhabditis elegans Hypothetical
protein K08C9.7 protein.
Length = 154
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = -3
Query: 197 SPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPASQPYTLXR 69
SPS K+F E G R P+G P++S Q+ + +QP TL +
Sbjct: 107 SPSPKYFKID--ENGKISRLPTGIPTVSIQREAFMTQPTTLRK 147
>Z83108-2|CAB05510.1| 820|Caenorhabditis elegans Hypothetical
protein F44E5.2 protein.
Length = 820
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = +2
Query: 2 CGAHVFACVVNFFG-CSRLPP 61
C H+F C + FFG CSR P
Sbjct: 555 CDRHIFRCSIPFFGFCSRCEP 575
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 27.9 bits (59), Expect = 5.8
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = -3
Query: 269 NSARGRLVTAATGSMGPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPSM-SPQKGSPA 93
+ + G VT GS + ++ S + V PGS+ S TPS S G+ +
Sbjct: 145 SGSTGSTVTVVPGSSSTFASSTPIASSSSPGSTVTVAPGSSSTYGSSTPSASSSSSGTMS 204
Query: 92 SQPYTLXRN*TVAAVSS 42
+ + TVA VSS
Sbjct: 205 TNSGSTGSTVTVAPVSS 221
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 27.9 bits (59), Expect = 5.8
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = -3
Query: 269 NSARGRLVTAATGSMGPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPSM-SPQKGSPA 93
+ + G VT GS + ++ S + V PGS+ S TPS S G+ +
Sbjct: 352 SGSTGSTVTVVPGSSSTFASSTPIASSSSPGSTVTVAPGSSSTYGSSTPSASSSSSGTMS 411
Query: 92 SQPYTLXRN*TVAAVSS 42
+ + TVA VSS
Sbjct: 412 TNSGSTGSTVTVAPVSS 428
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 27.9 bits (59), Expect = 5.8
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = -3
Query: 269 NSARGRLVTAATGSMGPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPSM-SPQKGSPA 93
+ + G VT GS + ++ S + V PGS+ S TPS S G+ +
Sbjct: 352 SGSTGSTVTVVPGSSSTFASSTPIASSSSPGSTVTVAPGSSSTYGSSTPSASSSSSGTMS 411
Query: 92 SQPYTLXRN*TVAAVSS 42
+ + TVA VSS
Sbjct: 412 TNSGSTGSTVTVAPVSS 428
>U41535-14|AAB63404.1| 169|Caenorhabditis elegans Hypothetical
protein F18A1.8 protein.
Length = 169
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -3
Query: 233 GSMGPADGALLLS---PSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPAS 90
G+ P L LS P+ + FL ++ S SG+P ++PQK +P S
Sbjct: 101 GTGSPLSAGLSLSNPLPAGRGFLSPAIQNTSNQFTFSGSPRITPQKHTPVS 151
>U39644-7|AAO44908.1| 307|Caenorhabditis elegans Collagen protein
171 protein.
Length = 307
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Frame = -3
Query: 239 ATGSMGPADGALLLSPSRKHFLFICVE--PGST----PRCPSGTPSMSPQKGSPASQPY 81
A G+ GP DG S F F C PG P+ P+G P Q G+P + +
Sbjct: 140 APGTNGP-DGRPATQASASDFCFDCPPGPPGPAGSIGPKGPNGNPGFDGQPGAPGNNGF 197
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,849,673
Number of Sequences: 27780
Number of extensions: 290397
Number of successful extensions: 806
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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