Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30193.Seq
         (517 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical pr...   110   7e-25
Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical pr...    28   3.4  
M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein ( C.ele...    28   3.4  
AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical ...    27   6.0  
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ...    27   6.0  
Z70686-9|CAA94614.3|  915|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z68161-12|CAA92301.1|  496|Caenorhabditis elegans Hypothetical p...    27   8.0  
Z54271-9|CAA91040.1|  496|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical
           protein F36A2.6 protein.
          Length = 151

 Score =  110 bits (264), Expect = 7e-25
 Identities = 46/58 (79%), Positives = 53/58 (91%)
 Frame = +2

Query: 254 QMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGISATHSSRFIPLK 427
           ++VG ++GIYNGK FNQ EIKPEMIG YLGEF+++YKPVKHGRPGI ATHSSRFIPLK
Sbjct: 94  ELVGGVIGIYNGKVFNQTEIKPEMIGFYLGEFAISYKPVKHGRPGIGATHSSRFIPLK 151



 Score = 97.5 bits (232), Expect = 5e-21
 Identities = 49/82 (59%), Positives = 58/82 (70%)
 Frame = +3

Query: 9   LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 188
           LKKKR FRKF YRGVDLDQLLDM  EQ  +L+          GLKRK +AL+ K+++AKK
Sbjct: 12  LKKKRTFRKFMYRGVDLDQLLDMSREQFTKLLPCRMRRRLDRGLKRKHLALIAKVQKAKK 71

Query: 189 EAPPNEKPEIVKTHLRNMIIVP 254
            A   EKP  VKTHLR+MII+P
Sbjct: 72  AAGVLEKPATVKTHLRDMIILP 93


>Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical
           protein T01B7.7 protein.
          Length = 348

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 1   TKPSRKSVFSGSSLTGELISISSLICPMSNSWN 99
           T  S   VFSG++L   L + +SL   +SN WN
Sbjct: 5   TATSGAIVFSGATLLVSLFAAASLYSQVSNIWN 37


>M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein (
           C.elegans collagen (rol-6) gene, complete cds. ).
          Length = 348

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 1   TKPSRKSVFSGSSLTGELISISSLICPMSNSWN 99
           T  S   VFSG++L   L + +SL   +SN WN
Sbjct: 5   TATSGAIVFSGATLLVSLFAAASLYSQVSNIWN 37


>AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical
           protein C36B7.5b protein.
          Length = 1148

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 206 EARDREDSLEKHDHRSQMVGSIVGIYNGKTFNQVEIKP 319
           E  +R+DSLEKH+ +  ++     I   +  N+  + P
Sbjct: 632 EELERDDSLEKHEAKEALIARAKTISKYRRTNETRLSP 669


>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
           protein C36B7.5a protein.
          Length = 1121

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 206 EARDREDSLEKHDHRSQMVGSIVGIYNGKTFNQVEIKP 319
           E  +R+DSLEKH+ +  ++     I   +  N+  + P
Sbjct: 632 EELERDDSLEKHEAKEALIARAKTISKYRRTNETRLSP 669


>Z70686-9|CAA94614.3|  915|Caenorhabditis elegans Hypothetical
           protein R10H10.7 protein.
          Length = 915

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 227 SLEKHDHRSQMVGSIVGIYNGKTFNQVEI 313
           +L K D R + V ++VGIY+    NQV +
Sbjct: 609 TLAKQDSRIKDVKNLVGIYSSHILNQVSL 637


>Z68161-12|CAA92301.1|  496|Caenorhabditis elegans Hypothetical
           protein F21D5.7 protein.
          Length = 496

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 191 GSSE*EARDREDSLEKHDHRSQMVGSIVGIYNGK 292
           GS + E RD     +K     + +GSI G++NGK
Sbjct: 411 GSHQQEVRDLLAQYKKFSDVVKKIGSIKGLFNGK 444


>Z54271-9|CAA91040.1|  496|Caenorhabditis elegans Hypothetical
           protein F21D5.7 protein.
          Length = 496

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 191 GSSE*EARDREDSLEKHDHRSQMVGSIVGIYNGK 292
           GS + E RD     +K     + +GSI G++NGK
Sbjct: 411 GSHQQEVRDLLAQYKKFSDVVKKIGSIKGLFNGK 444


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,694,498
Number of Sequences: 27780
Number of extensions: 197595
Number of successful extensions: 496
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)