Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0015.Seq
         (476 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z66512-3|CAA91325.1|  179|Caenorhabditis elegans Hypothetical pr...    28   4.0  
U46675-2|AAB52644.1|  125|Caenorhabditis elegans Hypothetical pr...    28   4.0  

>U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical protein
            C52E12.4 protein.
          Length = 1487

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 336  EPAFFRTPAHRRYLRK 289
            EP+F RTPAH  YL K
Sbjct: 1451 EPSFLRTPAHMTYLAK 1466


>Z66512-3|CAA91325.1|  179|Caenorhabditis elegans Hypothetical
           protein F52H3.5 protein.
          Length = 179

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 10/16 (62%), Positives = 15/16 (93%)
 Frame = +1

Query: 238 AFVRRASVHRIRGDTD 285
           A+V+RAS++R+RGD D
Sbjct: 117 AYVQRASIYRLRGDDD 132


>U46675-2|AAB52644.1|  125|Caenorhabditis elegans Hypothetical
           protein F35A5.5 protein.
          Length = 125

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -3

Query: 117 IPITRPRKSPVSLFFVTTCPVPGVGNLRACCLP 19
           +P+  P   P+ +      PVP   N  +CC+P
Sbjct: 23  VPVPMPMPMPMPMPMPVPVPVPVQSNCCSCCMP 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,720,807
Number of Sequences: 27780
Number of extensions: 209807
Number of successful extensions: 391
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)