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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0011
         (360 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical pr...    27   3.9  
AC024750-3|AAF60440.1|  384|Caenorhabditis elegans Hypothetical ...    26   9.1  

>U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical
           protein F28B4.3 protein.
          Length = 2229

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -1

Query: 201 FSFVSEYNKHFRSNLILLGFY***IEVNIFQSWAVE 94
           F +V  YN  FRS L L G Y      NI++S AV+
Sbjct: 599 FFYVHMYNTLFRSQLALSGDYSHCANQNIYKSVAVD 634


>AC024750-3|AAF60440.1|  384|Caenorhabditis elegans Hypothetical
           protein Y17G9A.4 protein.
          Length = 384

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 18  KKVAVLDKSHFLKIYAKVWICICLSF 95
           K+       HFL I A +W+C  +SF
Sbjct: 227 KQTGKHSSQHFLLILAFLWLCALISF 252


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,376,942
Number of Sequences: 27780
Number of extensions: 128258
Number of successful extensions: 201
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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