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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0024.Seq
         (368 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr...    39   0.001
Z78066-8|CAE48546.1|  204|Caenorhabditis elegans Hypothetical pr...    39   0.001
Z78066-7|CAE48544.1|  570|Caenorhabditis elegans Hypothetical pr...    39   0.001
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr...    39   0.001
Z78066-5|CAB01523.1|  222|Caenorhabditis elegans Hypothetical pr...    39   0.001
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr...    39   0.001
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    33   0.064
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    33   0.064
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.    33   0.064
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    33   0.064
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    33   0.064
U23511-13|AAC46800.1|  770|Caenorhabditis elegans Hypothetical p...    28   2.4  
U41540-2|AAK39230.1|  444|Caenorhabditis elegans Suppressor/enha...    27   3.2  
U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protei...    27   3.2  
AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin SE...    27   3.2  
Z30662-7|CAA83141.2|  566|Caenorhabditis elegans Hypothetical pr...    26   9.7  

>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical protein
            W06A7.3f protein.
          Length = 2488

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 15/28 (53%), Positives = 22/28 (78%)
 Frame = -1

Query: 344  DSLKXGVLLWCLTYVGACFNGITLIILG 261
            +S+K G++LW LTY+ + F+G TL ILG
Sbjct: 2405 ESIKFGLVLWSLTYIASWFSGFTLAILG 2432



 Score = 26.2 bits (55), Expect = 7.3
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -3

Query: 252  LFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAVPLGRRA 124
            +F++PK YE N+  +D +L      +  +   +   +P  R A
Sbjct: 2436 VFSVPKVYESNQEAIDPHLATISGHLKNVQNIIDEKLPFLRSA 2478


>Z78066-8|CAE48546.1|  204|Caenorhabditis elegans Hypothetical
           protein W06A7.3e protein.
          Length = 204

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 15/28 (53%), Positives = 22/28 (78%)
 Frame = -1

Query: 344 DSLKXGVLLWCLTYVGACFNGITLIILG 261
           +S+K G++LW LTY+ + F+G TL ILG
Sbjct: 121 ESIKFGLVLWSLTYIASWFSGFTLAILG 148



 Score = 26.2 bits (55), Expect = 7.3
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -3

Query: 252 LFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAVPLGRRA 124
           +F++PK YE N+  +D +L      +  +   +   +P  R A
Sbjct: 152 VFSVPKVYESNQEAIDPHLATISGHLKNVQNIIDEKLPFLRSA 194


>Z78066-7|CAE48544.1|  570|Caenorhabditis elegans Hypothetical
           protein W06A7.3d protein.
          Length = 570

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 15/28 (53%), Positives = 22/28 (78%)
 Frame = -1

Query: 344 DSLKXGVLLWCLTYVGACFNGITLIILG 261
           +S+K G++LW LTY+ + F+G TL ILG
Sbjct: 487 ESIKFGLVLWSLTYIASWFSGFTLAILG 514



 Score = 26.2 bits (55), Expect = 7.3
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -3

Query: 252 LFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAVPLGRRA 124
           +F++PK YE N+  +D +L      +  +   +   +P  R A
Sbjct: 518 VFSVPKVYESNQEAIDPHLATISGHLKNVQNIIDEKLPFLRSA 560


>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical protein
            W06A7.3c protein.
          Length = 2484

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 15/28 (53%), Positives = 22/28 (78%)
 Frame = -1

Query: 344  DSLKXGVLLWCLTYVGACFNGITLIILG 261
            +S+K G++LW LTY+ + F+G TL ILG
Sbjct: 2401 ESIKFGLVLWSLTYIASWFSGFTLAILG 2428



 Score = 26.2 bits (55), Expect = 7.3
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -3

Query: 252  LFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAVPLGRRA 124
            +F++PK YE N+  +D +L      +  +   +   +P  R A
Sbjct: 2432 VFSVPKVYESNQEAIDPHLATISGHLKNVQNIIDEKLPFLRSA 2474


>Z78066-5|CAB01523.1|  222|Caenorhabditis elegans Hypothetical
           protein W06A7.3b protein.
          Length = 222

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 15/28 (53%), Positives = 22/28 (78%)
 Frame = -1

Query: 344 DSLKXGVLLWCLTYVGACFNGITLIILG 261
           +S+K G++LW LTY+ + F+G TL ILG
Sbjct: 139 ESIKFGLVLWSLTYIASWFSGFTLAILG 166



 Score = 26.2 bits (55), Expect = 7.3
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -3

Query: 252 LFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAVPLGRRA 124
           +F++PK YE N+  +D +L      +  +   +   +P  R A
Sbjct: 170 VFSVPKVYESNQEAIDPHLATISGHLKNVQNIIDEKLPFLRSA 212


>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical protein
            W06A7.3a protein.
          Length = 2607

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 15/28 (53%), Positives = 22/28 (78%)
 Frame = -1

Query: 344  DSLKXGVLLWCLTYVGACFNGITLIILG 261
            +S+K G++LW LTY+ + F+G TL ILG
Sbjct: 2524 ESIKFGLVLWSLTYIASWFSGFTLAILG 2551



 Score = 26.2 bits (55), Expect = 7.3
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -3

Query: 252  LFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAVPLGRRA 124
            +F++PK YE N+  +D +L      +  +   +   +P  R A
Sbjct: 2555 VFSVPKVYESNQEAIDPHLATISGHLKNVQNIIDEKLPFLRSA 2597


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
            K08C7.3b protein.
          Length = 3672

 Score = 33.1 bits (72), Expect = 0.064
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = -3

Query: 261  LDTLFTLPKAYEMNKAQVDANLELARAKINEITAK 157
            LD++    +  E  KA++DAN+E  RAKI+EI  K
Sbjct: 2582 LDSIDEKVQEVEKLKAEIDANIEETRAKISEIAGK 2616


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
            K08C7.3a protein.
          Length = 3704

 Score = 33.1 bits (72), Expect = 0.064
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = -3

Query: 261  LDTLFTLPKAYEMNKAQVDANLELARAKINEITAK 157
            LD++    +  E  KA++DAN+E  RAKI+EI  K
Sbjct: 2582 LDSIDEKVQEVEKLKAEIDANIEETRAKISEIAGK 2616


>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
          Length = 1518

 Score = 33.1 bits (72), Expect = 0.064
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = -3

Query: 261 LDTLFTLPKAYEMNKAQVDANLELARAKINEITAK 157
           LD++    +  E  KA++DAN+E  RAKI+EI  K
Sbjct: 396 LDSIDEKVQEVEKLKAEIDANIEETRAKISEIAGK 430


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3704

 Score = 33.1 bits (72), Expect = 0.064
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = -3

Query: 261  LDTLFTLPKAYEMNKAQVDANLELARAKINEITAK 157
            LD++    +  E  KA++DAN+E  RAKI+EI  K
Sbjct: 2582 LDSIDEKVQEVEKLKAEIDANIEETRAKISEIAGK 2616


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
            protein.
          Length = 3704

 Score = 33.1 bits (72), Expect = 0.064
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = -3

Query: 261  LDTLFTLPKAYEMNKAQVDANLELARAKINEITAK 157
            LD++    +  E  KA++DAN+E  RAKI+EI  K
Sbjct: 2582 LDSIDEKVQEVEKLKAEIDANIEETRAKISEIAGK 2616


>U23511-13|AAC46800.1|  770|Caenorhabditis elegans Hypothetical
           protein C32D5.11 protein.
          Length = 770

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 258 PTEDDERDPVEARPHVREAPQQHAXLQRVTXSSTRN 365
           PT D+E  P+E+RP  R   ++   LQRV     R+
Sbjct: 548 PT-DEEIPPIESRPQTRREIERDRLLQRVREFDNRS 582


>U41540-2|AAK39230.1|  444|Caenorhabditis elegans
           Suppressor/enhancer of lin-12 protein12 protein.
          Length = 444

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 249 TAYPTEDDERDPVEARPHVREAPQQHAXLQRVTXSSTRNS 368
           TA+P E         RP V+  PQ+       T S+T+NS
Sbjct: 289 TAFPGEASCSSETPKRPKVKRIPQKVQIESNTTASTTQNS 328


>U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protein
           protein.
          Length = 461

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 249 TAYPTEDDERDPVEARPHVREAPQQHAXLQRVTXSSTRNS 368
           TA+P E         RP V+  PQ+       T S+T+NS
Sbjct: 289 TAFPGEASCSSETPKRPKVKRIPQKVQIESNTTASTTQNS 328


>AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin
           SEL-12 protein.
          Length = 444

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 249 TAYPTEDDERDPVEARPHVREAPQQHAXLQRVTXSSTRNS 368
           TA+P E         RP V+  PQ+       T S+T+NS
Sbjct: 289 TAFPGEASCSSETPKRPKVKRIPQKVQIESNTTASTTQNS 328


>Z30662-7|CAA83141.2|  566|Caenorhabditis elegans Hypothetical
           protein T16H12.6 protein.
          Length = 566

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -3

Query: 267 PRLDTLFTLPKAYEMNKAQVDANLELARA-KINEITAKVRAAVPL 136
           P L  L T+PKA+E     +  N+ L +A ++ E +A ++ ++PL
Sbjct: 101 PDLHLLLTIPKAFEQG---IKPNISLQKAVELLEPSAFLQMSIPL 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,910,288
Number of Sequences: 27780
Number of extensions: 54203
Number of successful extensions: 245
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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