Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0014
         (763 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56963-4|AAB38117.2|  316|Caenorhabditis elegans Serpentine rece...    30   2.1  
AL021501-2|CAA16415.2|  356|Caenorhabditis elegans Hypothetical ...    29   2.7  
AC084154-10|AAK29873.1| 1140|Caenorhabditis elegans Hypothetical...    28   6.3  

>U56963-4|AAB38117.2|  316|Caenorhabditis elegans Serpentine
           receptor, class v protein29 protein.
          Length = 316

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -3

Query: 548 RCYS--LIVRFYTLIILFNIVKILITFNYIVT 459
           RCYS   +  FYT+++   I  I+I  NYI T
Sbjct: 34  RCYSKTYVTTFYTILLQHCIADIIIMVNYIAT 65


>AL021501-2|CAA16415.2|  356|Caenorhabditis elegans Hypothetical
           protein Y61B8A.2 protein.
          Length = 356

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 471 LYRNKF-ITYSRTKILYFLILLVKLNVTYNYCVRWRPSD 358
           L +NKF IT  +T+++Y+ + L+    +  Y V++ P D
Sbjct: 137 LVQNKFRITRQKTRVIYYFLFLIPWMSSILYVVKFIPED 175


>AC084154-10|AAK29873.1| 1140|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.2 protein.
          Length = 1140

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 761 LFLIIYFSFTVYNLWV-DTSI*LDQITHVSSY 669
           LFLI +F+F V   W  DT    ++ITH++ +
Sbjct: 85  LFLIPFFNFQVLQFWYSDTKDRFERITHLNQW 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,850,006
Number of Sequences: 27780
Number of extensions: 316305
Number of successful extensions: 689
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)