Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30026
         (311 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81047-2|CAB02828.1|  376|Caenorhabditis elegans Hypothetical pr...    28   1.6  
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related...    27   2.8  
Z50029-1|CAA90340.2|  460|Caenorhabditis elegans Hypothetical pr...    27   3.6  
Z70686-2|CAA94610.1|  570|Caenorhabditis elegans Hypothetical pr...    26   4.8  
U20142-2|AAB60235.1|  570|Caenorhabditis elegans SPE-26 protein ...    26   4.8  
Z32680-2|CAA83597.1| 1218|Caenorhabditis elegans Hypothetical pr...    25   8.4  
U23516-6|AAG38883.1|  132|Caenorhabditis elegans Hypothetical pr...    25   8.4  

>Z81047-2|CAB02828.1|  376|Caenorhabditis elegans Hypothetical
           protein C41G6.3 protein.
          Length = 376

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = +3

Query: 105 TKLSISWL*IWNTRTYSSEPLGTLSNS*VFATDSQCSFTADNYREVTQVTLLSKRLERF* 284
           TK+   +L   N    S  P+  L     F+    C F +  YR+V +   +SK+ +   
Sbjct: 304 TKIQRKYLEFENAVLTSEFPIAVLKTFNAFSHFFVCFFLSSQYRDVVKSLFISKKKKNQI 363

Query: 285 TDTQATS 305
             T++TS
Sbjct: 364 DLTRSTS 370


>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
           see also lmb-protein 2 protein.
          Length = 1535

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/17 (64%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
 Frame = -3

Query: 213 CIANRWQRP--NYLKAC 169
           CIAN W+RP  NY  AC
Sbjct: 372 CIANHWRRPGENYCVAC 388


>Z50029-1|CAA90340.2|  460|Caenorhabditis elegans Hypothetical
           protein ZC504.1 protein.
          Length = 460

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 18/74 (24%), Positives = 30/74 (40%)
 Frame = +1

Query: 1   FCFKNDIKISCTLMTMTQFEFSGASHDRCSYSLLRLSFLYPGCRYGIQGLIQVNL*ARFQ 180
           FC    I+ SC + T    +F      RC+  + + +  Y  C+    G + +       
Sbjct: 199 FCCSVHIEASCPVETEPYLDFLSKIPVRCTVGVTQCNIGY-SCQSSQSGSL-IGFCCTIP 256

Query: 181 IVRSLPPIRNAVSP 222
            +   PP R+ VSP
Sbjct: 257 KINYRPPSRSTVSP 270


>Z70686-2|CAA94610.1|  570|Caenorhabditis elegans Hypothetical
           protein R10H10.2 protein.
          Length = 570

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 135 WNTRTYSSEPLGTLSNS*VFATDSQCSFTADNYREVTQVTLLSKRLERF 281
           W+      EP   +SNS V        F   N+RE+T+  + S+  E F
Sbjct: 318 WDRCNNMMEPRNYISNSSVVYDGRIYVFGGQNFREITRTAVRSRTGEVF 366


>U20142-2|AAB60235.1|  570|Caenorhabditis elegans SPE-26 protein
           protein.
          Length = 570

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 135 WNTRTYSSEPLGTLSNS*VFATDSQCSFTADNYREVTQVTLLSKRLERF 281
           W+      EP   +SNS V        F   N+RE+T+  + S+  E F
Sbjct: 318 WDRCNNMMEPRNYISNSSVVYDGRIYVFGGQNFREITRTAVRSRTGEVF 366


>Z32680-2|CAA83597.1| 1218|Caenorhabditis elegans Hypothetical
           protein C28A5.2 protein.
          Length = 1218

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 22  KISCTLMTMTQFEFSGASHDRCSYSLLRLSFLY 120
           KI CT++ +   +F  +  D C   L+R + +Y
Sbjct: 802 KIFCTVIAVESIKFPPSFDDTCIKGLVRFAVVY 834


>U23516-6|AAG38883.1|  132|Caenorhabditis elegans Hypothetical
           protein B0416.7a protein.
          Length = 132

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 81  VMGRTRELKLRHGHQCTRNFNIVFKT 4
           ++ R  EL++   H C+RN   VFKT
Sbjct: 78  LLDRNFELQMVVFHNCSRNTETVFKT 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,510,140
Number of Sequences: 27780
Number of extensions: 107567
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)