Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30021
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83231-3|CAB05751.1|  247|Caenorhabditis elegans Hypothetical pr...    32   0.41 
U50300-5|AAC48103.2|  337|Caenorhabditis elegans Serpentine rece...    30   1.6  
U55363-2|AAA97961.3|  357|Caenorhabditis elegans Serpentine rece...    28   5.0  
Z66494-2|CAA91257.1|  821|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z83231-3|CAB05751.1|  247|Caenorhabditis elegans Hypothetical
           protein F57G9.3 protein.
          Length = 247

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 22/76 (28%), Positives = 33/76 (43%)
 Frame = -3

Query: 423 KYTFFSMATLRKCYHTKHVFFPVILKLFGFYCNIINNL*FLWENRLFKIHSLNILNIFAY 244
           +YTF     L        + F VI++ + FY    N    LW   +    ++NI+ I A 
Sbjct: 136 QYTFPKTIKLSNPQKYTILAFSVIMEFYHFYMCCWNISSNLWPINILLCTAINIMEIPAI 195

Query: 243 FFGSYISSYTNDRPHF 196
               Y  +Y +DR HF
Sbjct: 196 IVAFY--AYNSDRTHF 209


>U50300-5|AAC48103.2|  337|Caenorhabditis elegans Serpentine
           receptor, class t protein18 protein.
          Length = 337

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/64 (23%), Positives = 33/64 (51%)
 Frame = +3

Query: 21  FKFGWAYSKSTLICTVKQILNTSILIENSQYGNVFWKLIIQNDCNLYIKINI*LYRKIKN 200
           F F + ++ S+++         S L+     G+ FW+L     C +Y+ +N  + ++++N
Sbjct: 263 FLFCFFHATSSVVYVYMNFFEISELL--IVIGHFFWQLSSGTVCIIYLTLNKSIRQEVRN 320

Query: 201 VACR 212
           + CR
Sbjct: 321 LICR 324


>U55363-2|AAA97961.3|  357|Caenorhabditis elegans Serpentine
           receptor, class h protein28 protein.
          Length = 357

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 9   YCKNFKFGWAYSKSTLICTVKQILNTSILIENSQYGNVFW-KLIIQN 146
           Y  + +FG  +   T I +V  + N ++L EN      FW KL+  N
Sbjct: 142 YKLSIRFGHLFVYGTYISSVCSLSNFALLYENQDNAKFFWYKLLAGN 188


>Z66494-2|CAA91257.1|  821|Caenorhabditis elegans Hypothetical
           protein C34C6.2 protein.
          Length = 821

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 33  WAYSKSTLICTVKQILNTSILIENSQYGNVFWKLIIQND 149
           W ++   + C  K+IL  S L+    YG+ F K+ I ++
Sbjct: 298 WRHNVPIIECWAKKILGLSTLVCRKMYGDDFLKIDIVDE 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,497,441
Number of Sequences: 27780
Number of extensions: 269897
Number of successful extensions: 617
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)