Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30001
         (340 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54327-5|CAD57689.1|  238|Caenorhabditis elegans Hypothetical pr...    28   1.5  
Z54327-3|CAD36481.1|  596|Caenorhabditis elegans Hypothetical pr...    28   1.5  
Z54327-2|CAA91123.1|  658|Caenorhabditis elegans Hypothetical pr...    28   1.5  
AF480493-1|AAL84283.1|  596|Caenorhabditis elegans EFF-1B precur...    28   1.5  
AF480492-1|AAL84282.1|  658|Caenorhabditis elegans EFF-1A precur...    28   1.5  
Z83128-3|CAB05637.1|  415|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z83128-2|CAB05636.1|  412|Caenorhabditis elegans Hypothetical pr...    27   4.5  
U50197-2|AAA91255.2|  624|Caenorhabditis elegans Hypothetical pr...    27   4.5  
AY305830-1|AAR11975.1|  418|Caenorhabditis elegans nuclear recep...    27   4.5  
AF273811-1|AAG15160.1|  415|Caenorhabditis elegans nuclear recep...    27   4.5  
AF273809-1|AAG15158.1|  418|Caenorhabditis elegans nuclear recep...    27   4.5  
Z54327-10|CAH04696.1|  596|Caenorhabditis elegans Hypothetical p...    26   6.0  
Z72506-5|CAA96616.2|  259|Caenorhabditis elegans Hypothetical pr...    26   7.9  
U50301-12|AAB37053.2|  486|Caenorhabditis elegans Hypothetical p...    26   7.9  
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p...    26   7.9  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    26   7.9  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    26   7.9  
AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical...    26   7.9  
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical...    26   7.9  

>Z54327-5|CAD57689.1|  238|Caenorhabditis elegans Hypothetical
           protein C26D10.5d protein.
          Length = 238

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 236 DRNVSTCR-RSDNISTCPKYMRSTFATPSPFRTQFTNQLPLATLTDVI 96
           D   STC   S   + CP+  +S   T S +RT F NQ P+    D I
Sbjct: 136 DATSSTCTAESHQFTACPESDKSD-ETSSCYRTFFPNQTPIGCSEDDI 182


>Z54327-3|CAD36481.1|  596|Caenorhabditis elegans Hypothetical
           protein C26D10.5b protein.
          Length = 596

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 236 DRNVSTCR-RSDNISTCPKYMRSTFATPSPFRTQFTNQLPLATLTDVI 96
           D   STC   S   + CP+  +S   T S +RT F NQ P+    D I
Sbjct: 136 DATSSTCTAESHQFTACPESDKSD-ETSSCYRTFFPNQTPIGCSEDDI 182


>Z54327-2|CAA91123.1|  658|Caenorhabditis elegans Hypothetical
           protein C26D10.5a protein.
          Length = 658

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 236 DRNVSTCR-RSDNISTCPKYMRSTFATPSPFRTQFTNQLPLATLTDVI 96
           D   STC   S   + CP+  +S   T S +RT F NQ P+    D I
Sbjct: 136 DATSSTCTAESHQFTACPESDKSD-ETSSCYRTFFPNQTPIGCSEDDI 182


>AF480493-1|AAL84283.1|  596|Caenorhabditis elegans EFF-1B precursor
           protein.
          Length = 596

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 236 DRNVSTCR-RSDNISTCPKYMRSTFATPSPFRTQFTNQLPLATLTDVI 96
           D   STC   S   + CP+  +S   T S +RT F NQ P+    D I
Sbjct: 136 DATSSTCTAESHQFTACPESDKSD-ETSSCYRTFFPNQTPIGCSEDDI 182


>AF480492-1|AAL84282.1|  658|Caenorhabditis elegans EFF-1A precursor
           protein.
          Length = 658

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 236 DRNVSTCR-RSDNISTCPKYMRSTFATPSPFRTQFTNQLPLATLTDVI 96
           D   STC   S   + CP+  +S   T S +RT F NQ P+    D I
Sbjct: 136 DATSSTCTAESHQFTACPESDKSD-ETSSCYRTFFPNQTPIGCSEDDI 182


>Z83128-3|CAB05637.1|  415|Caenorhabditis elegans Hypothetical
           protein W01D2.2b protein.
          Length = 415

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 185 KYMRSTFATPSPFRTQFTNQLPLATLTDVIFPGEKTGDINDVIFFFRRDF 36
           ++ + T+     FR  F N   ++  T +    E+   +NDV+  FRR F
Sbjct: 163 EFWKLTYPGTYDFRYAFHNTKVVSPRTPLTPTAERIATLNDVVADFRRAF 212


>Z83128-2|CAB05636.1|  412|Caenorhabditis elegans Hypothetical
           protein W01D2.2a protein.
          Length = 412

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 185 KYMRSTFATPSPFRTQFTNQLPLATLTDVIFPGEKTGDINDVIFFFRRDF 36
           ++ + T+     FR  F N   ++  T +    E+   +NDV+  FRR F
Sbjct: 163 EFWKLTYPGTYDFRYAFHNTKVVSPRTPLTPTAERIATLNDVVADFRRAF 212


>U50197-2|AAA91255.2|  624|Caenorhabditis elegans Hypothetical
           protein F25E2.2 protein.
          Length = 624

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = -3

Query: 248 VYGKDRNVSTCRRSDNISTCPKYMRSTFATPSPFRTQFTNQLPLATLT 105
           V GKD   ++ +R    +  P    +T  TP P  T  T   P  T T
Sbjct: 399 VSGKDGKGNSVKREVPTTPLPTTTTTTTTTPKPTTTTTTTTTPAPTTT 446


>AY305830-1|AAR11975.1|  418|Caenorhabditis elegans nuclear receptor
           NHR-61 protein.
          Length = 418

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 185 KYMRSTFATPSPFRTQFTNQLPLATLTDVIFPGEKTGDINDVIFFFRRDF 36
           ++ + T+     FR  F N   ++  T +    E+   +NDV+  FRR F
Sbjct: 169 EFWKLTYPGTYDFRYAFHNTKVVSPRTPLTPTAERIATLNDVVADFRRAF 218


>AF273811-1|AAG15160.1|  415|Caenorhabditis elegans nuclear receptor
           NHR-61 protein.
          Length = 415

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 185 KYMRSTFATPSPFRTQFTNQLPLATLTDVIFPGEKTGDINDVIFFFRRDF 36
           ++ + T+     FR  F N   ++  T +    E+   +NDV+  FRR F
Sbjct: 166 EFWKLTYPGTYDFRYAFHNTKVVSPRTPLTPTAERIATLNDVVADFRRAF 215


>AF273809-1|AAG15158.1|  418|Caenorhabditis elegans nuclear receptor
           NHR-61 protein.
          Length = 418

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 185 KYMRSTFATPSPFRTQFTNQLPLATLTDVIFPGEKTGDINDVIFFFRRDF 36
           ++ + T+     FR  F N   ++  T +    E+   +NDV+  FRR F
Sbjct: 166 EFWKLTYPGTYDFRYAFHNTKVVSPRTPLTPTAERIATLNDVVADFRRAF 215


>Z54327-10|CAH04696.1|  596|Caenorhabditis elegans Hypothetical
           protein C26D10.7 protein.
          Length = 596

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 236 DRNVSTCR-RSDNISTCPKYMRSTFATPSPFRTQFTNQLPLATLTDVI 96
           D + S C   S   + CP+  +S   T S +RT F NQ P+    D I
Sbjct: 136 DSSSSKCTAESHQFTACPESDKSD-ETSSCYRTFFPNQTPIGCSEDDI 182


>Z72506-5|CAA96616.2|  259|Caenorhabditis elegans Hypothetical
           protein F07A5.4 protein.
          Length = 259

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 6/28 (21%), Positives = 17/28 (60%)
 Frame = -1

Query: 229 MFQPVDGQTTFRRVQNICVQRLQHLRHF 146
           +F P+  Q + + ++ +C++    L+H+
Sbjct: 56  IFMPIYAQVSKKHIRKVCMEHFHSLKHY 83


>U50301-12|AAB37053.2|  486|Caenorhabditis elegans Hypothetical
           protein F20D6.10 protein.
          Length = 486

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 240 AVDSKVKTRNNCGSEKKPKKERQPK 314
           + +S V  R N G  + PKKE+QP+
Sbjct: 325 STNSTVSHRVNRGLSETPKKEKQPR 349


>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
           protein C39D10.7 protein.
          Length = 1185

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 218 CRRSDNISTCPKYMRSTFATPS 153
           C   +N+  CP+Y  +T ATP+
Sbjct: 731 CDVKENVEGCPEYKPTTDATPA 752


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
           protein K07E12.1a protein.
          Length = 13100

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 191 TSKCCLTVDRLKHFC 235
           T KC ++ DR  HFC
Sbjct: 72  TGKCVISADRASHFC 86


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
           protein.
          Length = 13100

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 191 TSKCCLTVDRLKHFC 235
           T KC ++ DR  HFC
Sbjct: 72  TGKCVISADRASHFC 86


>AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical
            protein Y43F8B.3b protein.
          Length = 1398

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 142  VRNGEGVANVERIYFGHVE 198
            VRNGEG  N+ R Y+  VE
Sbjct: 1120 VRNGEGNFNMTRYYYNPVE 1138


>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
            protein Y43F8B.3a protein.
          Length = 1816

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 142  VRNGEGVANVERIYFGHVE 198
            VRNGEG  N+ R Y+  VE
Sbjct: 1538 VRNGEGNFNMTRYYYNPVE 1556


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,061,507
Number of Sequences: 27780
Number of extensions: 129774
Number of successful extensions: 434
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)