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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00003
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal prote...    91   9e-19
U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...    91   9e-19
Z48584-8|CAK55179.1|  435|Caenorhabditis elegans Hypothetical pr...    33   0.15 
Z48584-7|CAH04712.1|  448|Caenorhabditis elegans Hypothetical pr...    33   0.15 
Z48584-5|CAD57717.1|  501|Caenorhabditis elegans Hypothetical pr...    33   0.15 
Z48584-4|CAD57716.1|  536|Caenorhabditis elegans Hypothetical pr...    33   0.15 
Z48584-3|CAD57715.1|  524|Caenorhabditis elegans Hypothetical pr...    33   0.15 
Z48584-2|CAA88477.2|  481|Caenorhabditis elegans Hypothetical pr...    33   0.15 
Z68010-3|CAA92011.1|  558|Caenorhabditis elegans Hypothetical pr...    32   0.35 
Z67756-4|CAA91765.1|  558|Caenorhabditis elegans Hypothetical pr...    32   0.35 
AF005246-1|AAB95119.1|  556|Caenorhabditis elegans voltage-depen...    32   0.35 
Z78016-5|CAB01442.2|  479|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z81082-6|CAB03098.1|  279|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AL132898-13|CAB60948.2|  152|Caenorhabditis elegans Hypothetical...    29   4.3  
AL034543-5|CAA22519.1|  279|Caenorhabditis elegans Hypothetical ...    29   4.3  
AL034543-1|CAA22516.1|  243|Caenorhabditis elegans Hypothetical ...    29   4.3  
Z54327-13|CAE48494.1|  619|Caenorhabditis elegans Hypothetical p...    28   7.6  
Z54307-9|CAE48498.1|  619|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AC084197-25|AAK68591.1|  609|Caenorhabditis elegans Hypothetical...    28   7.6  

>U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform b protein.
          Length = 88

 Score = 90.6 bits (215), Expect = 9e-19
 Identities = 38/79 (48%), Positives = 51/79 (64%)
 Frame = +2

Query: 20  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 199
           +GN M+ N HF K W + +KTWF+QPAR+ RR+QNR               LR +VRCP 
Sbjct: 4   RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63

Query: 200 VRYHTKVRAGRGFTLREIR 256
            RY+TK R GRGF+L+E++
Sbjct: 64  KRYNTKTRLGRGFSLQELK 82


>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score = 90.6 bits (215), Expect = 9e-19
 Identities = 38/79 (48%), Positives = 51/79 (64%)
 Frame = +2

Query: 20  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 199
           +GN M+ N HF K W + +KTWF+QPAR+ RR+QNR               LR +VRCP 
Sbjct: 4   RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63

Query: 200 VRYHTKVRAGRGFTLREIR 256
            RY+TK R GRGF+L+E++
Sbjct: 64  KRYNTKTRLGRGFSLQELK 82



 Score = 78.2 bits (184), Expect = 5e-15
 Identities = 38/67 (56%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
 Frame = +3

Query: 279 ARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQL 455
           ARTIGIAVD RR NK+ E L+ N  R+KEY+A+LILFP K     KG+++ EE K+A QL
Sbjct: 91  ARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAEELKVAAQL 150

Query: 456 RGPLMPV 476
           RG ++P+
Sbjct: 151 RGDVLPL 157


>Z48584-8|CAK55179.1|  435|Caenorhabditis elegans Hypothetical
           protein ZK1321.2f protein.
          Length = 435

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 342 FAMIQQTCCVYGDLQQFQSFGQILGSICGLISRRVNPLPARTLV 211
           F ++  T   YGDL     FG+++G +C +I      LP   +V
Sbjct: 364 FVLVTMTTVGYGDLVPLSPFGKVVGGMCAMIGVLTLALPVPIIV 407


>Z48584-7|CAH04712.1|  448|Caenorhabditis elegans Hypothetical
           protein ZK1321.2e protein.
          Length = 448

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 342 FAMIQQTCCVYGDLQQFQSFGQILGSICGLISRRVNPLPARTLV 211
           F ++  T   YGDL     FG+++G +C +I      LP   +V
Sbjct: 377 FVLVTMTTVGYGDLVPLSPFGKVVGGMCAMIGVLTLALPVPIIV 420


>Z48584-5|CAD57717.1|  501|Caenorhabditis elegans Hypothetical
           protein ZK1321.2d protein.
          Length = 501

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 342 FAMIQQTCCVYGDLQQFQSFGQILGSICGLISRRVNPLPARTLV 211
           F ++  T   YGDL     FG+++G +C +I      LP   +V
Sbjct: 430 FVLVTMTTVGYGDLVPLSPFGKVVGGMCAMIGVLTLALPVPIIV 473


>Z48584-4|CAD57716.1|  536|Caenorhabditis elegans Hypothetical
           protein ZK1321.2c protein.
          Length = 536

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 342 FAMIQQTCCVYGDLQQFQSFGQILGSICGLISRRVNPLPARTLV 211
           F ++  T   YGDL     FG+++G +C +I      LP   +V
Sbjct: 465 FVLVTMTTVGYGDLVPLSPFGKVVGGMCAMIGVLTLALPVPIIV 508


>Z48584-3|CAD57715.1|  524|Caenorhabditis elegans Hypothetical
           protein ZK1321.2b protein.
          Length = 524

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 342 FAMIQQTCCVYGDLQQFQSFGQILGSICGLISRRVNPLPARTLV 211
           F ++  T   YGDL     FG+++G +C +I      LP   +V
Sbjct: 453 FVLVTMTTVGYGDLVPLSPFGKVVGGMCAMIGVLTLALPVPIIV 496


>Z48584-2|CAA88477.2|  481|Caenorhabditis elegans Hypothetical
           protein ZK1321.2a protein.
          Length = 481

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 342 FAMIQQTCCVYGDLQQFQSFGQILGSICGLISRRVNPLPARTLV 211
           F ++  T   YGDL     FG+++G +C +I      LP   +V
Sbjct: 410 FVLVTMTTVGYGDLVPLSPFGKVVGGMCAMIGVLTLALPVPIIV 453


>Z68010-3|CAA92011.1|  558|Caenorhabditis elegans Hypothetical
           protein R07A4.1 protein.
          Length = 558

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 342 FAMIQQTCCVYGDLQQFQSFGQILGSICGLISRRVNPLPARTLV 211
           +A+   T   YGD+    SFG+++GS+C ++      LP   +V
Sbjct: 399 WAICTMTTVGYGDMTPHTSFGRLVGSLCAVMGVLTIALPVPVIV 442


>Z67756-4|CAA91765.1|  558|Caenorhabditis elegans Hypothetical
           protein R07A4.1 protein.
          Length = 558

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 342 FAMIQQTCCVYGDLQQFQSFGQILGSICGLISRRVNPLPARTLV 211
           +A+   T   YGD+    SFG+++GS+C ++      LP   +V
Sbjct: 399 WAICTMTTVGYGDMTPHTSFGRLVGSLCAVMGVLTIALPVPVIV 442


>AF005246-1|AAB95119.1|  556|Caenorhabditis elegans
           voltage-dependent potassium channelalpha subunit
           protein.
          Length = 556

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 342 FAMIQQTCCVYGDLQQFQSFGQILGSICGLISRRVNPLPARTLV 211
           +A+   T   YGD+    SFG+++GS+C ++      LP   +V
Sbjct: 397 WAICTMTTVGYGDMTPHTSFGRLVGSLCAVMGVLTIALPVPVIV 440


>Z78016-5|CAB01442.2|  479|Caenorhabditis elegans Hypothetical
           protein R186.5 protein.
          Length = 479

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 342 FAMIQQTCCVYGDLQQFQSFGQILGSICGLISRRVNPLPARTLV 211
           +A++  T   YGD+      G+++GSIC L       LP   +V
Sbjct: 369 WAIVTMTTIGYGDITPHTYLGRLIGSICALAGVLTIALPVPVIV 412


>Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical
           protein ZK1010.8 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
 Frame = -1

Query: 156 RGAT-ALAFF-ILFCFLRYRRAGWLNQVLTNL 67
           RGAT A+A + I++CF+++   GW  QV+ N+
Sbjct: 9   RGATIAIAVWNIIYCFIQFGILGWQFQVVKNI 40


>Z81082-6|CAB03098.1|  279|Caenorhabditis elegans Hypothetical
           protein F42G4.6 protein.
          Length = 279

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +3

Query: 429 EERKLATQLRGPLMPVQQPAPKSVARPS--LKMKRTSKLINT*EELAPLPNSS 581
           EE+KLA +L   L  ++   PKS  R S   K K++  + +T E LA +  S+
Sbjct: 90  EEQKLADKLAAKLRKLEVKEPKSKKRGSKERKKKKSEPVESTYESLATIEGST 142


>AL132898-13|CAB60948.2|  152|Caenorhabditis elegans Hypothetical
           protein Y59A8B.20 protein.
          Length = 152

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 188 RCPTVRYHTKVRAGRGFT-LREIRPQIEPSICPN-DWNCCRSP*TQQVC 328
           R P  + H   R    FT   +  P I P  CP  D+N  RSP T+QVC
Sbjct: 99  RDPAQKVHRWFRRVNRFTNTDQCEPYIFP-YCPELDFNLWRSPRTKQVC 146


>AL034543-5|CAA22519.1|  279|Caenorhabditis elegans Hypothetical
           protein F42G4.6 protein.
          Length = 279

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +3

Query: 429 EERKLATQLRGPLMPVQQPAPKSVARPS--LKMKRTSKLINT*EELAPLPNSS 581
           EE+KLA +L   L  ++   PKS  R S   K K++  + +T E LA +  S+
Sbjct: 90  EEQKLADKLAAKLRKLEVKEPKSKKRGSKERKKKKSEPVESTYESLATIEGST 142


>AL034543-1|CAA22516.1|  243|Caenorhabditis elegans Hypothetical
           protein Y81G3A.1 protein.
          Length = 243

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +3

Query: 429 EERKLATQLRGPLMPVQQPAPKSVARPS--LKMKRTSKLINT*EELAPLPNSS 581
           EE+KLA +L   L  ++   PKS  R S   K K++  + +T E LA +  S+
Sbjct: 90  EEQKLADKLAAKLRKLEVKEPKSKKRGSKERKKKKSEPVESTYESLATIEGST 142


>Z54327-13|CAE48494.1|  619|Caenorhabditis elegans Hypothetical
           protein F14F11.1h protein.
          Length = 619

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 312 YGDLQQFQSFGQILGSICGLISRRVNPLPARTLV 211
           +GDL    S G+++GS+C L+      LP   +V
Sbjct: 477 FGDLVPQTSLGRLVGSVCALMGVLTIALPVPVIV 510


>Z54307-9|CAE48498.1|  619|Caenorhabditis elegans Hypothetical
           protein F14F11.1h protein.
          Length = 619

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 312 YGDLQQFQSFGQILGSICGLISRRVNPLPARTLV 211
           +GDL    S G+++GS+C L+      LP   +V
Sbjct: 477 FGDLVPQTSLGRLVGSVCALMGVLTIALPVPVIV 510


>AC084197-25|AAK68591.1|  609|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.19 protein.
          Length = 609

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -1

Query: 342 FAMIQQTCCVYGDLQQFQSFGQILGSICGLISRRVNPLPARTLV 211
           + ++  T   YGD+      G+I+G +C L    V  LP   +V
Sbjct: 364 YTIVTLTTLGYGDMVPSTIMGKIVGGVCSLSGVLVIALPVPVIV 407


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,719,698
Number of Sequences: 27780
Number of extensions: 299789
Number of successful extensions: 820
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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