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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_D09
         (524 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...   100   6e-22
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...   100   6e-22
AY204199-1|AAO39200.1|  360|Caenorhabditis elegans nuclear recep...    30   1.2  
AL022288-6|CAA18368.1|  341|Caenorhabditis elegans Hypothetical ...    30   1.2  
AF273832-1|AAG15180.1|  408|Caenorhabditis elegans nuclear recep...    28   3.6  
AF022984-9|AAB69950.2|  393|Caenorhabditis elegans Nuclear hormo...    28   3.6  
Z92817-6|CAB60324.1|  384|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z83111-7|CAB05534.2|  384|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z83217-2|CAB05680.2|  319|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score =  100 bits (240), Expect = 6e-22
 Identities = 47/84 (55%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
 Frame = +3

Query: 186 WFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALK 365
           WFY R A++ RH+Y R P G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K
Sbjct: 53  WFYTRAASLARHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIK 111

Query: 366 LVEKVQDG-GRILTTQGRRDLDRI 434
            VEK  DG GRIL+ QGR+DLDRI
Sbjct: 112 WVEKHPDGKGRILSKQGRKDLDRI 135



 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 28/49 (57%), Positives = 36/49 (73%)
 Frame = +2

Query: 35  RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDP 181
           R+ ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DP
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDP 51


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score =  100 bits (240), Expect = 6e-22
 Identities = 47/84 (55%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
 Frame = +3

Query: 186 WFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALK 365
           WFY R A++ RH+Y R P G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K
Sbjct: 53  WFYTRAASLARHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIK 111

Query: 366 LVEKVQDG-GRILTTQGRRDLDRI 434
            VEK  DG GRIL+ QGR+DLDRI
Sbjct: 112 WVEKHPDGKGRILSKQGRKDLDRI 135



 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 28/49 (57%), Positives = 36/49 (73%)
 Frame = +2

Query: 35  RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDP 181
           R+ ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DP
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDP 51


>AY204199-1|AAO39200.1|  360|Caenorhabditis elegans nuclear receptor
           NHR-113 protein.
          Length = 360

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -1

Query: 482 TCCLACCLAFRRTLGSDSVKVSSTLCGENATTVLNFLNKLQC 357
           +CC+AC   FRRT     VK   T C  N   V++F  K  C
Sbjct: 43  SCCIACAAFFRRT-----VKNQFT-CNANNDCVISFEKKFTC 78


>AL022288-6|CAA18368.1|  341|Caenorhabditis elegans Hypothetical
           protein ZK1025.9 protein.
          Length = 341

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -1

Query: 482 TCCLACCLAFRRTLGSDSVKVSSTLCGENATTVLNFLNKLQC 357
           +CC+AC   FRRT     VK   T C  N   V++F  K  C
Sbjct: 24  SCCIACAAFFRRT-----VKNQFT-CNANNDCVISFEKKFTC 59


>AF273832-1|AAG15180.1|  408|Caenorhabditis elegans nuclear receptor
           NHR-90 protein.
          Length = 408

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 479 CCLACCLAFRRTLGSD--SVKVSSTLCGENA 393
           CC AC + FRR  G+    +K  S  CGE A
Sbjct: 41  CCRACAVFFRRRAGTKYLRLKCLSVHCGEAA 71


>AF022984-9|AAB69950.2|  393|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 90 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 479 CCLACCLAFRRTLGSD--SVKVSSTLCGENA 393
           CC AC + FRR  G+    +K  S  CGE A
Sbjct: 26  CCRACAVFFRRRAGTKYLRLKCLSVHCGEAA 56


>Z92817-6|CAB60324.1|  384|Caenorhabditis elegans Hypothetical
           protein F57G8.6 protein.
          Length = 384

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -1

Query: 479 CCLACCLAFRRTLGSD--SVKVSSTLCG 402
           CC AC + FRR  G+    +K SS  CG
Sbjct: 21  CCRACAVFFRRRAGTKYLRLKCSSENCG 48


>Z83111-7|CAB05534.2|  384|Caenorhabditis elegans Hypothetical
           protein F57G8.6 protein.
          Length = 384

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -1

Query: 479 CCLACCLAFRRTLGSD--SVKVSSTLCG 402
           CC AC + FRR  G+    +K SS  CG
Sbjct: 21  CCRACAVFFRRRAGTKYLRLKCSSENCG 48


>Z83217-2|CAB05680.2|  319|Caenorhabditis elegans Hypothetical
           protein C10C6.3 protein.
          Length = 319

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = +3

Query: 228 IRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRIL 401
           I S +  K  T ++ G  R G  P      SGS  +K   +  A+K  EK +D GR L
Sbjct: 141 IESDLKEKPDTNVYTG-SREGYVPPPAKEGSGSGGKKKDMNNVAVKPDEKKKDSGRKL 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,611,743
Number of Sequences: 27780
Number of extensions: 235279
Number of successful extensions: 637
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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