SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_C16
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal prote...   150   6e-37
AC006708-12|AAT81173.1|  908|Caenorhabditis elegans Hypothetical...    30   1.3  
AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical...    30   1.3  
Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical p...    29   1.7  
Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical ...    29   1.7  
AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical ...    29   1.7  
Z22179-1|CAA80169.1|  254|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical pr...    27   6.7  
AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ...    27   6.7  
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage...    27   6.7  

>U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 33 protein.
          Length = 124

 Score =  150 bits (364), Expect = 6e-37
 Identities = 71/121 (58%), Positives = 89/121 (73%)
 Frame = +2

Query: 146 VLRKASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYR 325
           V R+ S P  GRLY KA+FTG+KRGLR Q E+T+LLK+EG  ++ DA FYAGK  VY+Y+
Sbjct: 6   VARRPSAPTTGRLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLYK 65

Query: 326 AKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLYPSR 505
           A  +T   G      T+ RAIWGK+TRPHGN+G+VRAKF  N+P  A+G RIRV+LYPS 
Sbjct: 66  AHNKTLKTG--HTVATRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALGKRIRVLLYPSN 123

Query: 506 I 508
           I
Sbjct: 124 I 124


>AC006708-12|AAT81173.1|  908|Caenorhabditis elegans Hypothetical
           protein Y110A7A.9b protein.
          Length = 908

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -1

Query: 448 RLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSSV-HIDAMLASI 293
           ++ L   T   + W GHLA ++ Q+   A  +  NW  ++ +    DA+LA +
Sbjct: 839 KMGLDDPTEVESKWIGHLADEAKQIRVLAEASRRNWPDVVEATSSADAILARL 891


>AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical
            protein Y110A7A.9a protein.
          Length = 1019

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -1

Query: 448  RLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSSV-HIDAMLASI 293
            ++ L   T   + W GHLA ++ Q+   A  +  NW  ++ +    DA+LA +
Sbjct: 950  KMGLDDPTEVESKWIGHLADEAKQIRVLAEASRRNWPDVVEATSSADAILARL 1002


>Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical
           protein T06D8.1b protein.
          Length = 3653

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +2

Query: 227 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 376
           N  E     KVE AKD+        KHCV  ++A+   P+   P   K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580


>Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical
           protein T06D8.1a protein.
          Length = 3719

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +2

Query: 227 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 376
           N  E     KVE AKD+        KHCV  ++A+   P+   P   K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580


>Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical
           protein T06D8.1b protein.
          Length = 3653

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +2

Query: 227 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 376
           N  E     KVE AKD+        KHCV  ++A+   P+   P   K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580


>Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical
           protein T06D8.1a protein.
          Length = 3719

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +2

Query: 227 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 376
           N  E     KVE AKD+        KHCV  ++A+   P+   P   K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580


>AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical
           protein T06D8.1b protein.
          Length = 3653

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +2

Query: 227 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 376
           N  E     KVE AKD+        KHCV  ++A+   P+   P   K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580


>AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical
           protein T06D8.1a protein.
          Length = 3719

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +2

Query: 227 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 376
           N  E     KVE AKD+        KHCV  ++A+   P+   P   K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580


>Z22179-1|CAA80169.1|  254|Caenorhabditis elegans Hypothetical
           protein F58A4.1 protein.
          Length = 254

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 25/82 (30%), Positives = 34/82 (41%)
 Frame = +3

Query: 159 HQSPATAGCTQRPYSQDISVVYATSTRTPLSSRLKEQKTVMMQSFMLASIASMCTELRRG 338
           H SP+T+  T    S   S   +TST TP +   +   T    S   +S  +  T  +  
Sbjct: 94  HSSPSTSTSTSTSTSTSTSTSRSTSTVTPTT---RSSTTTTATSTPTSSSKATTTSAQIT 150

Query: 339 HQFPEVPVAKKPSCVLSGAR*P 404
              PE+P A  P  VL G   P
Sbjct: 151 Q--PEIPQA-APGTVLKGEEFP 169


>Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical
           protein F17C8.2 protein.
          Length = 296

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 507 ILEGYSITRILCPIAWAGRLDLNLARTLPELP 412
           +L+G S+ RI    AW   +D+ +  T P  P
Sbjct: 38  VLDGVSVFRIETDAAWTDMMDIQITVTPPSKP 69


>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
           protein Y39A1B.3 protein.
          Length = 1499

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +3

Query: 198 YSQDISVVYATSTRTPLSSRLKEQKTVMMQSFMLASIASMCTELRRG 338
           +S D+ +V+A S    L+ RL    TV +Q ++  SIAS   + +RG
Sbjct: 141 HSVDVELVHAVSMFVILTQRL----TVQLQLYVSKSIASANQQAKRG 183


>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
           compensation protein protein.
          Length = 1455

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +3

Query: 198 YSQDISVVYATSTRTPLSSRLKEQKTVMMQSFMLASIASMCTELRRG 338
           +S D+ +V+A S    L+ RL    TV +Q ++  SIAS   + +RG
Sbjct: 141 HSVDVELVHAVSMFVILTQRL----TVQLQLYVSKSIASANQQAKRG 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,050,761
Number of Sequences: 27780
Number of extensions: 253934
Number of successful extensions: 587
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -