Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a08r
         (779 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66519-5|CAA91382.2|  500|Caenorhabditis elegans Hypothetical pr...    66   2e-11
Z70038-4|CAA93881.1|  427|Caenorhabditis elegans Hypothetical pr...    29   2.8  

>Z66519-5|CAA91382.2|  500|Caenorhabditis elegans Hypothetical
           protein B0334.5 protein.
          Length = 500

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 28/57 (49%), Positives = 41/57 (71%)
 Frame = -2

Query: 685 ASFHKVIVIIGFLSLFHTAFSATQHRSYLRITSQEFTTLPLDIVIQAVVSLFAVMWG 515
           ++ +++I I+  LSL H A+SA QHR YLR+T Q F  LP D+V Q V+SL A+++G
Sbjct: 3   STIYRLITIVSLLSLLHCAYSAAQHRFYLRLTEQPFINLPSDVVAQTVISLIALIYG 59


>Z70038-4|CAA93881.1|  427|Caenorhabditis elegans Hypothetical
           protein ZK1067.5 protein.
          Length = 427

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/62 (22%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = -2

Query: 778 HMMQXCIAVFVNNYYNLHLFILSCY*SVHNMASFHKVIVI--IGFLSLFHTAFSATQHRS 605
           ++ + C    V++Y+  H F++SC+ +   +A FH V++   + ++      F+  +H++
Sbjct: 102 YISKYCSVSIVSHYF--HFFLISCFLANLRLALFHLVLIFATVAYIIAGAYLFTKIEHQA 159

Query: 604 YL 599
            L
Sbjct: 160 EL 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,700,765
Number of Sequences: 27780
Number of extensions: 336293
Number of successful extensions: 812
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)