Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_A22
(459 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42845-1|AAA83599.1| 196|Caenorhabditis elegans Ribosomal prote... 225 1e-59
U64844-3|AAB18306.1| 196|Caenorhabditis elegans Ribosomal prote... 223 6e-59
AF016685-7|AAG24151.1| 341|Caenorhabditis elegans Seven tm rece... 29 1.6
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 29 2.1
U80027-17|AAC48114.1| 90|Caenorhabditis elegans Hypothetical p... 28 3.8
U29488-1|AAA68773.2| 338|Caenorhabditis elegans Serpentine rece... 28 3.8
AF016685-8|AAG24150.1| 340|Caenorhabditis elegans Seven tm rece... 27 5.0
Z78539-5|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical pr... 27 8.7
U61946-8|AAC24392.1| 185|Caenorhabditis elegans Hypothetical pr... 27 8.7
>U42845-1|AAA83599.1| 196|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 11.2 protein.
Length = 196
Score = 225 bits (550), Expect = 1e-59
Identities = 105/123 (85%), Positives = 114/123 (92%)
Frame = +2
Query: 89 SKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFXIRRNEK 268
++NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+F IRRNEK
Sbjct: 15 ARNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEK 74
Query: 269 IAVHCTVRGAKAEEILERGLKVREYELRXDNFSATGNFGFGIQEHIDLGIKYDPSIGIYG 448
IAVHCTVRG KAEEILE+GLKV+EYEL +NFS TGNFGFG+QEHIDLGIKYDPSIGIYG
Sbjct: 75 IAVHCTVRGPKAEEILEKGLKVKEYELYKENFSDTGNFGFGVQEHIDLGIKYDPSIGIYG 134
Query: 449 LXF 457
+ F
Sbjct: 135 MDF 137
>U64844-3|AAB18306.1| 196|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 11.1 protein.
Length = 196
Score = 223 bits (544), Expect = 6e-59
Identities = 104/122 (85%), Positives = 112/122 (91%)
Frame = +2
Query: 92 KNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFXIRRNEKI 271
+NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+F IRRNEKI
Sbjct: 16 RNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKI 75
Query: 272 AVHCTVRGAKAEEILERGLKVREYELRXDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGL 451
AVHCTVRG KAEEILE+GLKV+EYEL +NFS TGNFGFG+QEHIDLGIKYDP IGIYG+
Sbjct: 76 AVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGM 135
Query: 452 XF 457
F
Sbjct: 136 DF 137
>AF016685-7|AAG24151.1| 341|Caenorhabditis elegans Seven tm
receptor protein 86 protein.
Length = 341
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 346 FIFSDFQTPLKDFF-CFSSSDCTMDSNLFIT 257
++ DF+ +KDFF C SD T S +F T
Sbjct: 300 YVIKDFRIGVKDFFKCGKKSDNTSSSTIFTT 330
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 28.7 bits (61), Expect = 2.1
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -3
Query: 385 AKITRGGEVVTPQFIFSDFQTPLKDFFCFSSSDCTMDSNLFITTD 251
AK+ + G ++ PQ FS+F+ + FF + T+ N I+ D
Sbjct: 5666 AKMLQTG-IIPPQVNFSEFRDGMGQFFTVNGKKSTISQNSLISID 5709
>U80027-17|AAC48114.1| 90|Caenorhabditis elegans Hypothetical
protein T28A11.4 protein.
Length = 90
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -2
Query: 278 GQQSFHYDGXQKTALYT*PWKIQAVVL*VAPTPWRHESACHRIHQ 144
G+Q+FH++G +K A WK V P+ ++ S+ +IHQ
Sbjct: 51 GEQTFHFNGPEKGAFLDSDWKE------VDPSNYQMGSSHQKIHQ 89
>U29488-1|AAA68773.2| 338|Caenorhabditis elegans Serpentine
receptor, class a (alpha)protein 31 protein.
Length = 338
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 301 FSSSDCTMDSNLFITTDXKRPHCIPSLGKYRLLS 200
F SS+C ++SNL+ T+ C SL RLLS
Sbjct: 97 FQSSECLIESNLYYYTNLFSSLCCISLFFDRLLS 130
>AF016685-8|AAG24150.1| 340|Caenorhabditis elegans Seven tm
receptor protein 85 protein.
Length = 340
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 346 FIFSDFQTPLKDFFCFSSSDCTMDSNLFITTDXKRPH 236
++ DF+T +K+FF + T S+ +TT K H
Sbjct: 300 YVIKDFRTAVKNFFKRGTKSGTSPSSAVLTTKKKAWH 336
>Z78539-5|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical protein
C31E10.8 protein.
Length = 1272
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 201 PVSCSNTLAARVSLSPDSPTHMF 133
P+ C+ A+RVS+S D TH +
Sbjct: 1003 PIFCAEKRASRVSISIDRETHQY 1025
>U61946-8|AAC24392.1| 185|Caenorhabditis elegans Hypothetical
protein F47C12.7 protein.
Length = 185
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 334 DFQTPLKDFFCFSSSDCTMDSNLFITTDXK 245
DF T +F CF S DC+ D+ + T K
Sbjct: 61 DFPTFHYEFNCFLSHDCSTDNKWYCQTRAK 90
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,753,950
Number of Sequences: 27780
Number of extensions: 183890
Number of successful extensions: 482
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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