Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0008
(702 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr... 28 5.6
AL132847-1|CAB63371.1| 375|Caenorhabditis elegans Hypothetical ... 28 7.4
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 27 9.8
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 27 9.8
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z70037-4|CAA93877.1| 146|Caenorhabditis elegans Hypothetical pr... 27 9.8
AF040661-10|AAG24215.1| 426|Caenorhabditis elegans Hypothetical... 27 9.8
>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical protein
T12D8.1 protein.
Length = 2561
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/96 (20%), Positives = 40/96 (41%)
Frame = +3
Query: 30 ELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSIS 209
++Y DL+ ++ S++ N R++ + R + PD G + ++
Sbjct: 1147 QVYQDLKRVKFDRERLNGSLE-EQLNKARKQKKNLAAKKRQMVKTQTAAPDYDGRNIDLN 1205
Query: 210 LPDSARLASALEAFRIIPRMVASHHRPLGRVHEPNV 317
D LA+ E ++ + H R L + HE N+
Sbjct: 1206 ESDQQTLATLTEQIKVTQAEIELHRRDL-KKHESNL 1240
>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical protein
T12D8.1 protein.
Length = 2561
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/96 (20%), Positives = 40/96 (41%)
Frame = +3
Query: 30 ELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSIS 209
++Y DL+ ++ S++ N R++ + R + PD G + ++
Sbjct: 1147 QVYQDLKRVKFDRERLNGSLE-EQLNKARKQKKNLAAKKRQMVKTQTAAPDYDGRNIDLN 1205
Query: 210 LPDSARLASALEAFRIIPRMVASHHRPLGRVHEPNV 317
D LA+ E ++ + H R L + HE N+
Sbjct: 1206 ESDQQTLATLTEQIKVTQAEIELHRRDL-KKHESNL 1240
>AL132847-1|CAB63371.1| 375|Caenorhabditis elegans Hypothetical
protein Y48G10A.2 protein.
Length = 375
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/51 (21%), Positives = 28/51 (54%)
Frame = -3
Query: 271 TIRGIILNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETR 119
+++G I + + ++ K ++ EP+E+ + D+ + ++HSK E +
Sbjct: 306 SLKGQIKSENYTSIAVTRLYKMLIRTEPKETALRRAADYLNELTHSKTEKK 356
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -2
Query: 557 VTTGITGL----WQPSVHSDVLFDPSMSALPIIAKQNSPSV 447
VTTG++ L W P+ + DP+ S P+ A+ S SV
Sbjct: 2255 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 2295
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -2
Query: 557 VTTGITGL----WQPSVHSDVLFDPSMSALPIIAKQNSPSV 447
VTTG++ L W P+ + DP+ S P+ A+ S SV
Sbjct: 2277 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 2317
>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical protein
R11A8.7d protein.
Length = 1427
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -2
Query: 557 VTTGITGL----WQPSVHSDVLFDPSMSALPIIAKQNSPSV 447
VTTG++ L W P+ + DP+ S P+ A+ S SV
Sbjct: 1098 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 1138
>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical protein
R11A8.7c protein.
Length = 1405
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -2
Query: 557 VTTGITGL----WQPSVHSDVLFDPSMSALPIIAKQNSPSV 447
VTTG++ L W P+ + DP+ S P+ A+ S SV
Sbjct: 1076 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 1116
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -2
Query: 557 VTTGITGL----WQPSVHSDVLFDPSMSALPIIAKQNSPSV 447
VTTG++ L W P+ + DP+ S P+ A+ S SV
Sbjct: 2255 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 2295
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -2
Query: 557 VTTGITGL----WQPSVHSDVLFDPSMSALPIIAKQNSPSV 447
VTTG++ L W P+ + DP+ S P+ A+ S SV
Sbjct: 2277 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 2317
>Z70037-4|CAA93877.1| 146|Caenorhabditis elegans Hypothetical
protein T27D12.3 protein.
Length = 146
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 298 RPSGRWCEATIRGIILNASKAEAS 227
RPSG WC G+ L ++ EAS
Sbjct: 35 RPSGPWCVKLFVGLYLQGNRNEAS 58
>AF040661-10|AAG24215.1| 426|Caenorhabditis elegans Hypothetical
protein W10G11.6 protein.
Length = 426
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -3
Query: 337 REEPQFRTFGSCTRPSGRWCEATIRGIILNASKAEASLA 221
R EP +R F RPSG WC G +A+KA+A A
Sbjct: 255 RCEPGWRFFN---RPSGGWCIRVFTG--FHAAKADAEAA 288
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,141,699
Number of Sequences: 27780
Number of extensions: 325543
Number of successful extensions: 918
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -