Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0036
         (668 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55365-8|AAA98573.2|  383|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z81072-6|CAB03017.2|  196|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z49128-8|CAA88960.2|  989|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AL021171-6|CAA15960.2|  989|Caenorhabditis elegans Hypothetical ...    27   9.1  

>U55365-8|AAA98573.2|  383|Caenorhabditis elegans Hypothetical
           protein C12D5.2 protein.
          Length = 383

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = +3

Query: 72  KRTRKLTQTAKATKEQDSGSEKDSDFDSDGNYVGEKXLQADFEGRNPEDSDFHGIKQLLR 251
           + T+ LTQ+ K +KE     EK  D  ++  Y+  K  Q      NP  ++  G++ LLR
Sbjct: 97  RTTKNLTQSLKNSKE-----EKIKDVINELTYLDCKLEQFRLSAYNPNWTEIGGLEDLLR 151


>Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical
           protein K08E4.1 protein.
          Length = 1208

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 69  IKRTRKLTQTAKATKEQDSGSEKDS--DFDSDGNYVGEKXLQADFEGRNPEDSDF 227
           IK ++K  +   A++ + SGS+ D   D D D N   +K  +   + + P   DF
Sbjct: 28  IKNSKKDRKRKLASESEKSGSDDDDDDDDDEDENVTSKKSKKQKRKNKAPSGRDF 82


>Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical
           protein K08E4.1 protein.
          Length = 1208

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 69  IKRTRKLTQTAKATKEQDSGSEKDS--DFDSDGNYVGEKXLQADFEGRNPEDSDF 227
           IK ++K  +   A++ + SGS+ D   D D D N   +K  +   + + P   DF
Sbjct: 28  IKNSKKDRKRKLASESEKSGSDDDDDDDDDEDENVTSKKSKKQKRKNKAPSGRDF 82


>Z81072-6|CAB03017.2|  196|Caenorhabditis elegans Hypothetical
           protein F30A10.9 protein.
          Length = 196

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 245 TEAMFLKSNVDLGGLAQIIISQNYIGSVVK 334
           + AMF+K N  LG    +I+  N++   VK
Sbjct: 51  SSAMFMKYNTQLGPPFHVIVDTNFVNFAVK 80


>Z49128-8|CAA88960.2|  989|Caenorhabditis elegans Hypothetical
           protein M03C11.8 protein.
          Length = 989

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 99  AKATKEQDSGSEKDSDFDSDGNYVGEKXLQADFEGRNPEDSD 224
           AKA KEQ   +E D D++ D     E  + AD +    +DSD
Sbjct: 239 AKAQKEQKKKAESDEDWEED-----EDDMNADGDETPSDDSD 275


>AL021171-6|CAA15960.2|  989|Caenorhabditis elegans Hypothetical
           protein M03C11.8 protein.
          Length = 989

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 99  AKATKEQDSGSEKDSDFDSDGNYVGEKXLQADFEGRNPEDSD 224
           AKA KEQ   +E D D++ D     E  + AD +    +DSD
Sbjct: 239 AKAQKEQKKKAESDEDWEED-----EDDMNADGDETPSDDSD 275


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,949,872
Number of Sequences: 27780
Number of extensions: 215123
Number of successful extensions: 770
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)