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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0025
         (664 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016426-1|AAB65347.2|  254|Caenorhabditis elegans Hypothetical ...    33   0.18 
U00065-2|AAL27237.1|  672|Caenorhabditis elegans Prion-like-(q/n...    29   3.9  
AC006619-3|AAK68253.1|  943|Caenorhabditis elegans Hypothetical ...    29   3.9  
Z70311-2|CAA94374.1|  366|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z48009-12|CAA88089.1| 1137|Caenorhabditis elegans Hypothetical p...    28   5.1  
Z48007-3|CAA88054.1| 1137|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AL034365-4|CAA22262.1|  375|Caenorhabditis elegans Hypothetical ...    28   5.1  
Z73896-8|CAA98061.1|  525|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z73422-12|CAJ76980.1|  525|Caenorhabditis elegans Hypothetical p...    27   9.0  
Z73422-11|CAA97768.1|  423|Caenorhabditis elegans Hypothetical p...    27   9.0  
Z73422-10|CAA97772.1|  525|Caenorhabditis elegans Hypothetical p...    27   9.0  
Z66495-11|CAK12849.1|  502|Caenorhabditis elegans Hypothetical p...    27   9.0  
Z66495-2|CAA91267.2|  502|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>AF016426-1|AAB65347.2|  254|Caenorhabditis elegans Hypothetical
           protein W07B8.3 protein.
          Length = 254

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 25/80 (31%), Positives = 34/80 (42%)
 Frame = +1

Query: 376 SINCYICLLSHTAEYADALSRSHLQHWTRAVPLPPMSVEVRPTHSTPYILRVLLSVIRSL 555
           S N Y      + + A    R H Q  TRA+  PPMS     THS P  LR +   +++ 
Sbjct: 115 SYNMYPQRSPSSMDSAPDTYRHHPQQMTRAMSPPPMSTTTGSTHSPP--LRQIGETVKTT 172

Query: 556 PENYHSYQ*KCNTTYQRYEY 615
             +  SY       Y+ Y Y
Sbjct: 173 YSHSGSYGGLYPGGYKGYPY 192


>U00065-2|AAL27237.1|  672|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 25
           protein.
          Length = 672

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 189 CGPNSLFVNFRCYDTISVIQYC 254
           C PN + +N +CY+T+S+   C
Sbjct: 445 CQPNQVLINNQCYNTVSIGFQC 466



 Score = 28.7 bits (61), Expect = 3.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 189 CGPNSLFVNFRCYDTISVIQYCMIT 263
           C  N ++ N +CY+T+ +   C IT
Sbjct: 563 CNSNQVYYNNQCYNTVPIGSQCQIT 587


>AC006619-3|AAK68253.1|  943|Caenorhabditis elegans Hypothetical
           protein C46C11.1 protein.
          Length = 943

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +1

Query: 388 YICLLSHTAEYADALSRSH---LQHWTRAVPLPPMSVEVRPTHSTPY 519
           Y+ L  H   Y    S+SH   L+ W++A+  P +SVE       P+
Sbjct: 378 YLVLHCHGGGYVATSSKSHETYLRQWSKALNCPVVSVEYSLAPENPF 424


>Z70311-2|CAA94374.1|  366|Caenorhabditis elegans Hypothetical
           protein T25B9.2 protein.
          Length = 366

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 56  PFCKNINNFVFQQRYQITLRLHAYRQFSVF 145
           PFC  INN +      I+  L ++ QFSVF
Sbjct: 188 PFCAVINNTIMCMHGGISEHLTSFNQFSVF 217


>Z48009-12|CAA88089.1| 1137|Caenorhabditis elegans Hypothetical
           protein AH6.1 protein.
          Length = 1137

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 554 CRKIIIHISKSVILPIKDMSISYCH*TNPINLQLIKN 664
           C +I+ ++ K  + PI+   I+  H  NP  + L+K+
Sbjct: 768 CEEIVYNVKKGGLFPIRPEIITDIHDVNPALIALVKD 804


>Z48007-3|CAA88054.1| 1137|Caenorhabditis elegans Hypothetical
           protein AH6.1 protein.
          Length = 1137

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 554 CRKIIIHISKSVILPIKDMSISYCH*TNPINLQLIKN 664
           C +I+ ++ K  + PI+   I+  H  NP  + L+K+
Sbjct: 768 CEEIVYNVKKGGLFPIRPEIITDIHDVNPALIALVKD 804


>U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical
           protein D1044.7 protein.
          Length = 400

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 189 CGPNSLFVNFRCYDTISVIQYCMIT 263
           C  N ++ N +CY+T+++   C IT
Sbjct: 299 CNSNQVYYNGQCYNTVNIGFQCQIT 323


>AL034365-4|CAA22262.1|  375|Caenorhabditis elegans Hypothetical
           protein Y69E1A.4 protein.
          Length = 375

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 56  PFCKNINNFVFQQRYQITLRLHAYRQFSVF 145
           PFC  INN +      I+  L ++ QFSVF
Sbjct: 220 PFCAVINNTIMCMHGGISEHLTSFNQFSVF 249


>Z73896-8|CAA98061.1|  525|Caenorhabditis elegans Hypothetical
           protein B0564.9 protein.
          Length = 525

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 233 NFCDSILYDYLQLLQIVIEPFPEP 304
           NF  +I+ DY++ + I+I P P P
Sbjct: 493 NFPKTIVSDYVESISIIIPPIPPP 516


>Z73422-12|CAJ76980.1|  525|Caenorhabditis elegans Hypothetical
           protein B0564.9 protein.
          Length = 525

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 233 NFCDSILYDYLQLLQIVIEPFPEP 304
           NF  +I+ DY++ + I+I P P P
Sbjct: 493 NFPKTIVSDYVESISIIIPPIPPP 516


>Z73422-11|CAA97768.1|  423|Caenorhabditis elegans Hypothetical
           protein B0564.6b protein.
          Length = 423

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 233 NFCDSILYDYLQLLQIVIEPFPEP 304
           NF  +I+ DY++ + I+I P P P
Sbjct: 391 NFPKTIVSDYVESISIIIPPIPPP 414


>Z73422-10|CAA97772.1|  525|Caenorhabditis elegans Hypothetical
           protein B0564.6a protein.
          Length = 525

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 233 NFCDSILYDYLQLLQIVIEPFPEP 304
           NF  +I+ DY++ + I+I P P P
Sbjct: 493 NFPKTIVSDYVESISIIIPPIPPP 516


>Z66495-11|CAK12849.1|  502|Caenorhabditis elegans Hypothetical
           protein C36A4.3 protein.
          Length = 502

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -2

Query: 288 SITICSNCK*SYNIESQKLYHNI*SLQTASSDRTSQLHYIAFIYYCYKNTL 136
           ++T CS     Y    QKLY  I   +         +H + ++ Y YK TL
Sbjct: 319 AMTYCSYLLSKYPNVQQKLYEEIMEAKENGGLTYDSIHNMKYLDYVYKETL 369


>Z66495-2|CAA91267.2|  502|Caenorhabditis elegans Hypothetical
           protein C36A4.2 protein.
          Length = 502

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -2

Query: 288 SITICSNCK*SYNIESQKLYHNI*SLQTASSDRTSQLHYIAFIYYCYKNTL 136
           ++T CS     Y    QKLY  I   +         +H + ++ Y YK TL
Sbjct: 319 AMTYCSYLLSKYPNVQQKLYEEIMEAKENGGLTYDSIHNMKYLDYVYKETL 369


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,810,985
Number of Sequences: 27780
Number of extensions: 291675
Number of successful extensions: 792
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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