Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0032
         (425 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass...    27   5.6  
Z73098-8|CAA97334.2|  303|Caenorhabditis elegans Hypothetical pr...    26   9.8  

>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 162 protein.
          Length = 2643

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = -1

Query: 164 NYNFAGLIFIARCYSFTVEVNREHLLSTYFIRKIGTRQRDSNTS 33
           NY   GL  I  C     +   ++L  T   RKI T QR SN S
Sbjct: 661 NYTVHGLTGIMNCEGMAYDFTSDNLYMTDQRRKIITVQRLSNLS 704


>Z73098-8|CAA97334.2|  303|Caenorhabditis elegans Hypothetical
           protein T21C9.7 protein.
          Length = 303

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -2

Query: 271 PTLQTETHYCFTAEIGGAVVPTRADSQEVLPPVITQIII 155
           P      ++ ++  +GG    T A+S EVL  ++T +I+
Sbjct: 149 PIATNNAYFIYSPTLGGFATKTVANSTEVLNSLVTFMIV 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,659,589
Number of Sequences: 27780
Number of extensions: 209364
Number of successful extensions: 398
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)