Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0023
         (585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical pr...   198   2e-51
Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical p...   190   6e-49
CU457743-2|CAM36365.1|  695|Caenorhabditis elegans Hypothetical ...    31   0.60 
Z74031-2|CAA98454.2|  568|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical...    29   3.2  
Z70310-6|CAE17904.1|  293|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear recep...    28   5.6  
AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear recep...    28   5.6  
AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormo...    28   5.6  
AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormo...    28   5.6  
U88178-1|AAC24412.1|  296|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    27   7.4  
AF106576-1|AAC78177.2|  664|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical
           protein F54C9.1 protein.
          Length = 161

 Score =  198 bits (484), Expect = 2e-51
 Identities = 95/154 (61%), Positives = 118/154 (76%), Gaps = 2/154 (1%)
 Frame = +3

Query: 51  EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 230
           +D HF TGDSGA+ATFP QCSALRKN  VM+KGRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 7   DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAID 66

Query: 231 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLG 407
           IF  KK EDICPSTHNMDVP VKR +Y L  I DDGY +LM  ++ + ++DLK+PD +LG
Sbjct: 67  IFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLPDTELG 125

Query: 408 TQLRTDFDSGK-ELLCTVLKSCGEECVIAVKANT 506
            Q+R  ++  +  +L  V+ + GEE ++  K +T
Sbjct: 126 QQIRDAYEKDEGSVLVQVVSAIGEEAILGWKVST 159


>Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical
           protein T05G5.10 protein.
          Length = 195

 Score =  190 bits (463), Expect = 6e-49
 Identities = 89/154 (57%), Positives = 118/154 (76%), Gaps = 2/154 (1%)
 Frame = +3

Query: 51  EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 230
           ++  F++ +SGA+ATFP QCSALRKN  VM++GRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 41  DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 100

Query: 231 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLG 407
           IF  KK EDICPSTHNMDVP VKR +Y L  I +DG+ +LM  ++ +L++DLK+P+GDLG
Sbjct: 101 IFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMPEGDLG 159

Query: 408 TQLRTDFDSGK-ELLCTVLKSCGEECVIAVKANT 506
             +R   +  +  +L  V+ +CGEE ++  K +T
Sbjct: 160 NTIREALEKDEGSVLVQVVAACGEEAILGYKIST 193


>CU457743-2|CAM36365.1|  695|Caenorhabditis elegans Hypothetical
           protein K09E10.2 protein.
          Length = 695

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = +3

Query: 276 NMDVPHVKREDYQLTDI--SDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD-FDSGKEL 446
           N  +P +K++ Y L     ++ GY+  +   GDL+   KI D      LR D ++ G+  
Sbjct: 573 NKFIPFIKKKLYILDSFPRANSGYIARVP--GDLKNGKKIEDISKA-MLRPDGYERGRLR 629

Query: 447 LCTVLKSCGEEC 482
              ++K CG++C
Sbjct: 630 HAALVKECGDKC 641


>Z74031-2|CAA98454.2|  568|Caenorhabditis elegans Hypothetical
           protein F32D8.2 protein.
          Length = 568

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
 Frame = +3

Query: 231 IFNGKKYEDICPSTHNMDVPHVKREDYQLT------DISDDGYLTLMADN-GDLREDLK 386
           IF   + ED+   T +    H+ R + ++       D+S DGYLTL + N  DL  D++
Sbjct: 74  IFFPNEDEDVFGLTPDKSKQHIVRGECKINELNEKVDLSSDGYLTLRSKNTNDLPSDIR 132


>AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical
           protein F59E12.1 protein.
          Length = 811

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 46  TSKTHTLRPETPGPQPPSPCNVRP 117
           T K  T R E+P P PP P   RP
Sbjct: 358 TEKPETPRAESPDPLPPPPSKKRP 381


>Z70310-6|CAE17904.1|  293|Caenorhabditis elegans Hypothetical
           protein R11A8.8 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 336 GYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLC 452
           GYL      GD ++++K+ +G    Q+ +D D  K   C
Sbjct: 251 GYLPQQPKKGDKKKNIKLKEGRTEHQIVSDIDPAKLRAC 289


>U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical
           protein F09F9.4 protein.
          Length = 654

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 133 KPFLRRAEHCMGKVAEAPESPVSKCVSSMSP 41
           +P  +R+++C G + E  E  ++KC  +M P
Sbjct: 345 EPVPKRSKYCDGPLIETQECTLTKCPEAMMP 375


>AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 486

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = +1

Query: 16  VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCV 123
           V+K  T + ++S T      T    TPGP P +PC+  P V
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDV 189


>AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = +1

Query: 16  VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCV 123
           V+K  T + ++S T      T    TPGP P +PC+  P V
Sbjct: 13  VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDV 53


>AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform b protein.
          Length = 504

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = +1

Query: 16  VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCV 123
           V+K  T + ++S T      T    TPGP P +PC+  P V
Sbjct: 167 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDV 207


>AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform a protein.
          Length = 486

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = +1

Query: 16  VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCV 123
           V+K  T + ++S T      T    TPGP P +PC+  P V
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDV 189


>U88178-1|AAC24412.1|  296|Caenorhabditis elegans Hypothetical
           protein W09C3.4 protein.
          Length = 296

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 499 ALTAMTHSSPQDFSTVHNNSLPLSKSVRNCVPRSPSGILR 380
           ALT+MT   PQ       NSL  SK +   + ++P G+LR
Sbjct: 33  ALTSMTPGLPQTVRQTAINSLLSSKKL--AIQQAPGGVLR 70


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
            F57F4.4 protein.
          Length = 2090

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
 Frame = +1

Query: 358  TTVTCVRTSKSRMVTSAHSCVLTSTAARNCCAP---C*NPAVRSASSPSK 498
            T +TC  T+  + +  ++SC         CC     C NP   +   P+K
Sbjct: 1822 TLLTCDPTTVCQQLNMSNSCQTVEPGVSGCCCDTDGCLNPLTNTYPGPAK 1871


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
            interacting proteinprotein 1 protein.
          Length = 2153

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
 Frame = +1

Query: 358  TTVTCVRTSKSRMVTSAHSCVLTSTAARNCCAP---C*NPAVRSASSPSK 498
            T +TC  T+  + +  ++SC         CC     C NP   +   P+K
Sbjct: 1822 TLLTCDPTTVCQQLNMSNSCQTVEPGVSGCCCDTDGCLNPLTNTYPGPAK 1871


>AF106576-1|AAC78177.2|  664|Caenorhabditis elegans Hypothetical
           protein W07E6.1 protein.
          Length = 664

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +3

Query: 243 KKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM---ADNGDLREDLKIPDGDLGTQ 413
           KK +      H  + P  + E  QL D  +DG   L    +D+ DLR+D    D D G  
Sbjct: 45  KKVKKSAKKAHEEE-PIEQVEKLQLIDDDEDGLEGLSFPGSDDEDLRDDYSDDDSDAGDH 103

Query: 414 L 416
           L
Sbjct: 104 L 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,094,468
Number of Sequences: 27780
Number of extensions: 319847
Number of successful extensions: 1063
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)