Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0031
(800 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93376-2|CAD59146.2| 578|Caenorhabditis elegans Hypothetical pr... 33 0.24
Z82279-4|CAD59150.2| 578|Caenorhabditis elegans Hypothetical pr... 33 0.24
AL132949-42|CAD59173.2| 578|Caenorhabditis elegans Hypothetical... 33 0.24
AF016441-1|AAB65911.3| 383|Caenorhabditis elegans Hypothetical ... 30 1.7
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 29 2.9
Z69884-4|CAA93751.2| 913|Caenorhabditis elegans Hypothetical pr... 29 3.9
U64852-1|AAB04966.2| 1041|Caenorhabditis elegans Uncoordinated p... 28 8.9
AF338767-1|AAL15621.1| 1041|Caenorhabditis elegans UNC-83 protein. 28 8.9
>Z93376-2|CAD59146.2| 578|Caenorhabditis elegans Hypothetical
protein E01F3.1b protein.
Length = 578
Score = 33.1 bits (72), Expect = 0.24
Identities = 37/119 (31%), Positives = 51/119 (42%), Gaps = 21/119 (17%)
Frame = -2
Query: 331 LCFNTSKVSGSYSSTTKGYFLD-LKSAELP--------RLDMPLM*TSTTASGVLNG--- 188
L N +KV+GS S KG D L + ELP + M L +G+LN
Sbjct: 26 LSLNGAKVTGSSLSEAKGLIADMLMNKELPGNVASCLRAVTMLLEQRPLPLNGLLNDFGL 85
Query: 187 -SVINNPFHSEFS--STERPREAENISFKRLSK------VLLEPEKLNDSGLWRMLSSP 38
SV+ NP+ E +PR NI+F ++ V EP K S W+ +SP
Sbjct: 86 PSVVENPYGGESMVVGASKPR-ISNITFSTVTSATGLPTVPAEPNKARSSSYWKTEASP 143
>Z82279-4|CAD59150.2| 578|Caenorhabditis elegans Hypothetical
protein E01F3.1b protein.
Length = 578
Score = 33.1 bits (72), Expect = 0.24
Identities = 37/119 (31%), Positives = 51/119 (42%), Gaps = 21/119 (17%)
Frame = -2
Query: 331 LCFNTSKVSGSYSSTTKGYFLD-LKSAELP--------RLDMPLM*TSTTASGVLNG--- 188
L N +KV+GS S KG D L + ELP + M L +G+LN
Sbjct: 26 LSLNGAKVTGSSLSEAKGLIADMLMNKELPGNVASCLRAVTMLLEQRPLPLNGLLNDFGL 85
Query: 187 -SVINNPFHSEFS--STERPREAENISFKRLSK------VLLEPEKLNDSGLWRMLSSP 38
SV+ NP+ E +PR NI+F ++ V EP K S W+ +SP
Sbjct: 86 PSVVENPYGGESMVVGASKPR-ISNITFSTVTSATGLPTVPAEPNKARSSSYWKTEASP 143
>AL132949-42|CAD59173.2| 578|Caenorhabditis elegans Hypothetical
protein E01F3.1b protein.
Length = 578
Score = 33.1 bits (72), Expect = 0.24
Identities = 37/119 (31%), Positives = 51/119 (42%), Gaps = 21/119 (17%)
Frame = -2
Query: 331 LCFNTSKVSGSYSSTTKGYFLD-LKSAELP--------RLDMPLM*TSTTASGVLNG--- 188
L N +KV+GS S KG D L + ELP + M L +G+LN
Sbjct: 26 LSLNGAKVTGSSLSEAKGLIADMLMNKELPGNVASCLRAVTMLLEQRPLPLNGLLNDFGL 85
Query: 187 -SVINNPFHSEFS--STERPREAENISFKRLSK------VLLEPEKLNDSGLWRMLSSP 38
SV+ NP+ E +PR NI+F ++ V EP K S W+ +SP
Sbjct: 86 PSVVENPYGGESMVVGASKPR-ISNITFSTVTSATGLPTVPAEPNKARSSSYWKTEASP 143
>AF016441-1|AAB65911.3| 383|Caenorhabditis elegans Hypothetical
protein M03F8.4 protein.
Length = 383
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +3
Query: 405 SYSNVLGDLDIPKVKKQSLQHLKSSVEEDFQFLSELAALKAVTEKVESGAISADNII 575
++ N + +P +K ++L S + ED S+ ALK + K++S S NI+
Sbjct: 243 TFFNDFDEFFVPVIKSRTLFETISGLFEDPTIGSQRTALKYINAKIKSAPYSLKNIV 299
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 29.5 bits (63), Expect = 2.9
Identities = 35/106 (33%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Frame = -2
Query: 544 STFSVTAFKAASSLRNWKSSSTEDFKCCKDCFLT----FGISKSPNTFEYDKS*SESLKL 377
S+ S TA SS +SS+T + T + + K+ TF YD S S+ L
Sbjct: 516 SSVSSTASSTQSSTSTQQSSTTTKSETTTSSDGTNPDFYFVEKATTTF-YD---STSVNL 571
Query: 376 IFTSLLPPLVKR*LILCFNTSKVSGSYSSTTKGYFLDLKSAELPRL 239
S L + + I C TS S +Y STTK KS +PRL
Sbjct: 572 TLNSGLGIIGYQTSIEC--TSPTSSNYVSTTKDGACFTKSVSMPRL 615
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 29.5 bits (63), Expect = 2.9
Identities = 35/106 (33%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Frame = -2
Query: 544 STFSVTAFKAASSLRNWKSSSTEDFKCCKDCFLT----FGISKSPNTFEYDKS*SESLKL 377
S+ S TA SS +SS+T + T + + K+ TF YD S S+ L
Sbjct: 516 SSVSSTASSTQSSTSTQQSSTTTKSETTTSSDGTNPDFYFVEKATTTF-YD---STSVNL 571
Query: 376 IFTSLLPPLVKR*LILCFNTSKVSGSYSSTTKGYFLDLKSAELPRL 239
S L + + I C TS S +Y STTK KS +PRL
Sbjct: 572 TLNSGLGIIGYQTSIEC--TSPTSSNYVSTTKDGACFTKSVSMPRL 615
>Z69884-4|CAA93751.2| 913|Caenorhabditis elegans Hypothetical
protein F31F6.5 protein.
Length = 913
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -3
Query: 456 TVF*LLEYLNHLTHLNMTKADQSHL 382
TVF LLEYLN+L+ LN D L
Sbjct: 639 TVFFLLEYLNYLSELNAEVEDTERL 663
>U64852-1|AAB04966.2| 1041|Caenorhabditis elegans Uncoordinated
protein 83, isoform a protein.
Length = 1041
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +3
Query: 474 SSVEEDFQFLSELAALKAVTEKVESGAISADNIIDFYNLRINSLHAL 614
S VE SE LK + E I +N YNL ++SLH L
Sbjct: 8 SEVEMPNDISSEDHLLKVIESSAEEVDIFLENCSSLYNLILDSLHNL 54
>AF338767-1|AAL15621.1| 1041|Caenorhabditis elegans UNC-83 protein.
Length = 1041
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +3
Query: 474 SSVEEDFQFLSELAALKAVTEKVESGAISADNIIDFYNLRINSLHAL 614
S VE SE LK + E I +N YNL ++SLH L
Sbjct: 8 SEVEMPNDISSEDHLLKVIESSAEEVDIFLENCSSLYNLILDSLHNL 54
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,932,409
Number of Sequences: 27780
Number of extensions: 310081
Number of successful extensions: 892
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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