Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0098
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50069-5|AAY86213.1|  206|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z83744-2|CAB06039.1|  430|Caenorhabditis elegans Hypothetical pr...    28   5.0  

>U50069-5|AAY86213.1|  206|Caenorhabditis elegans Hypothetical
           protein C09B9.8 protein.
          Length = 206

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 603 ILLFYISDQFCQTYLTXFLDLKRLECWLLLGSST 502
           +LLFY+     Q Y T F  L+ +   L+LGSS+
Sbjct: 8   LLLFYLHPPIIQAYSTTFSRLEPISTRLILGSSS 41


>Z83744-2|CAB06039.1|  430|Caenorhabditis elegans Hypothetical
           protein C06A12.5 protein.
          Length = 430

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 472 KSCIFSNTILELG*FNLNFWHFQTLFLHLVLK 377
           K  I + T+LEL    LN WHF+ + +  V+K
Sbjct: 329 KELISNTTLLELSRPTLNSWHFEKVTIWPVIK 360


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,432,894
Number of Sequences: 27780
Number of extensions: 226513
Number of successful extensions: 356
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)