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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10a17
         (633 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical pr...   257   5e-69
Z82274-14|CAJ76933.1|   50|Caenorhabditis elegans Hypothetical p...    68   5e-12
AF022976-4|AAC69083.2|  345|Caenorhabditis elegans Serpentine re...    28   4.8  
Z81042-5|CAD44090.1|  331|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z81042-4|CAB02796.1|  272|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin...    28   6.4  
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis...    27   8.4  
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis...    27   8.4  
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis...    27   8.4  
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis...    27   8.4  
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis...    27   8.4  
D38541-1|BAA07544.1|  284|Caenorhabditis elegans CeTMII protein.       27   8.4  
D38540-1|BAA07543.1|  284|Caenorhabditis elegans CeTMI protein.        27   8.4  
D38539-2|BAA07541.1|  284|Caenorhabditis elegans CeTMII protein.       27   8.4  
D38539-1|BAA07540.1|  284|Caenorhabditis elegans CeTMI protein.        27   8.4  
AL132877-4|CAC70112.1|  284|Caenorhabditis elegans Hypothetical ...    27   8.4  
AL132877-1|CAC70114.1|  284|Caenorhabditis elegans Hypothetical ...    27   8.4  
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res...    27   8.4  

>Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical
           protein JC8.3a protein.
          Length = 165

 Score =  257 bits (629), Expect = 5e-69
 Identities = 116/162 (71%), Positives = 144/162 (88%)
 Frame = +1

Query: 121 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 300
           MPPKFDP EIKIV LRCVGGEVGATS+LAPK+GPLGLSPKK+G+DIAKAT DWKGLK+T 
Sbjct: 1   MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTC 60

Query: 301 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRS 480
           +LT+QNR A+I VVPSAA+LI++ LKEPPRDRKK KN+KHNG+++++ +I IA+IMR RS
Sbjct: 61  KLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRS 120

Query: 481 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTI 606
           MA+ L G+VKEILGTAQSVGCT++G+ PHD+I+ I +G + I
Sbjct: 121 MAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIEI 162


>Z82274-14|CAJ76933.1|   50|Caenorhabditis elegans Hypothetical
           protein JC8.3c protein.
          Length = 50

 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 30/47 (63%), Positives = 39/47 (82%)
 Frame = +1

Query: 466 MRNRSMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTI 606
           MR RSMA+ L G+VKEILGTAQSVGCT++G+ PHD+I+ I +G + I
Sbjct: 1   MRPRSMAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIEI 47


>AF022976-4|AAC69083.2|  345|Caenorhabditis elegans Serpentine
           receptor, class h protein37 protein.
          Length = 345

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 542 HPTDCAVPRISFTEPERYRAIDL 474
           HPT CAV    F +P +Y  IDL
Sbjct: 291 HPTACAVSLFLFYDPYQYYLIDL 313


>Z81042-5|CAD44090.1|  331|Caenorhabditis elegans Hypothetical
           protein C27H6.4b protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +2

Query: 401 SRKISNTTATSPLKM*SALRRS*ETDQWPGTFLAQ*KRFLAQHSQLDVLWRAGR 562
           SR +S TTA S       L     TD+    + A  KR+ A    +DVLWR  +
Sbjct: 94  SRSLSQTTAHSKTMSFEDLDALFGTDRVQEGYDALKKRYDAGEKSIDVLWRLAK 147


>Z81042-4|CAB02796.1|  272|Caenorhabditis elegans Hypothetical
           protein C27H6.4a protein.
          Length = 272

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +2

Query: 401 SRKISNTTATSPLKM*SALRRS*ETDQWPGTFLAQ*KRFLAQHSQLDVLWRAGR 562
           SR +S TTA S       L     TD+    + A  KR+ A    +DVLWR  +
Sbjct: 35  SRSLSQTTAHSKTMSFEDLDALFGTDRVQEGYDALKKRYDAGEKSIDVLWRLAK 88


>AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin
           protein 73 protein.
          Length = 577

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 294 DLETLPVTCGLGNVITHLFRRQTKRTDFR 208
           D ++LP+ C LG V+ + ++     TDFR
Sbjct: 386 DSQSLPIWCKLGKVVKYKYKVTPGWTDFR 414


>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
           resistance related protein1 protein.
          Length = 1540

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -1

Query: 402 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 277
           +F + R L+ GSD +    G  NNS +   V NC  H+D  T+P
Sbjct: 1   MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43


>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform e protein.
          Length = 1534

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -1

Query: 402 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 277
           +F + R L+ GSD +    G  NNS +   V NC  H+D  T+P
Sbjct: 1   MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43


>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform c protein.
          Length = 1534

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -1

Query: 402 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 277
           +F + R L+ GSD +    G  NNS +   V NC  H+D  T+P
Sbjct: 1   MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43


>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform b protein.
          Length = 1534

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -1

Query: 402 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 277
           +F + R L+ GSD +    G  NNS +   V NC  H+D  T+P
Sbjct: 1   MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43


>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform a protein.
          Length = 1528

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -1

Query: 402 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 277
           +F + R L+ GSD +    G  NNS +   V NC  H+D  T+P
Sbjct: 1   MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43


>D38541-1|BAA07544.1|  284|Caenorhabditis elegans CeTMII protein.
          Length = 284

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
 Frame = +1

Query: 241 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 411
           + GDD+ KA  D       ++    TVQ  +A++A +     L+   L+      K    
Sbjct: 52  QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111

Query: 412 IKHNGNISLEDVIGIAKIMRNRSM 483
                  ++++   + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135


>D38540-1|BAA07543.1|  284|Caenorhabditis elegans CeTMI protein.
          Length = 284

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
 Frame = +1

Query: 241 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 411
           + GDD+ KA  D       ++    TVQ  +A++A +     L+   L+      K    
Sbjct: 52  QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111

Query: 412 IKHNGNISLEDVIGIAKIMRNRSM 483
                  ++++   + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135


>D38539-2|BAA07541.1|  284|Caenorhabditis elegans CeTMII protein.
          Length = 284

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
 Frame = +1

Query: 241 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 411
           + GDD+ KA  D       ++    TVQ  +A++A +     L+   L+      K    
Sbjct: 52  QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111

Query: 412 IKHNGNISLEDVIGIAKIMRNRSM 483
                  ++++   + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135


>D38539-1|BAA07540.1|  284|Caenorhabditis elegans CeTMI protein.
          Length = 284

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
 Frame = +1

Query: 241 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 411
           + GDD+ KA  D       ++    TVQ  +A++A +     L+   L+      K    
Sbjct: 52  QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111

Query: 412 IKHNGNISLEDVIGIAKIMRNRSM 483
                  ++++   + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135


>AL132877-4|CAC70112.1|  284|Caenorhabditis elegans Hypothetical
           protein Y105E8B.1d protein.
          Length = 284

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
 Frame = +1

Query: 241 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 411
           + GDD+ KA  D       ++    TVQ  +A++A +     L+   L+      K    
Sbjct: 52  QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111

Query: 412 IKHNGNISLEDVIGIAKIMRNRSM 483
                  ++++   + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135


>AL132877-1|CAC70114.1|  284|Caenorhabditis elegans Hypothetical
           protein Y105E8B.1a protein.
          Length = 284

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
 Frame = +1

Query: 241 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 411
           + GDD+ KA  D       ++    TVQ  +A++A +     L+   L+      K    
Sbjct: 52  QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111

Query: 412 IKHNGNISLEDVIGIAKIMRNRSM 483
                  ++++   + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135


>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
           resistance-associatedprotein protein.
          Length = 1534

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -1

Query: 402 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 277
           +F + R L+ GSD +    G  NNS +   V NC  H+D  T+P
Sbjct: 1   MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,142,042
Number of Sequences: 27780
Number of extensions: 320006
Number of successful extensions: 828
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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