SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10a16
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal prote...   307   6e-84
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis...    31   0.57 
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis...    31   0.57 
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis...    31   0.57 
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis...    31   0.57 
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis...    31   0.57 
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res...    31   0.57 
Z81513-2|CAB04186.2|  489|Caenorhabditis elegans Hypothetical pr...    31   0.99 
AF515833-1|AAM55225.1|  489|Caenorhabditis elegans synaptonemal ...    31   0.99 
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U88315-4|AAB42369.3|  778|Caenorhabditis elegans Hypothetical pr...    28   7.0  
L14745-8|AAA27923.1|  244|Caenorhabditis elegans Tetraspanin fam...    28   7.0  
AL117205-7|CAB55160.1|  293|Caenorhabditis elegans Hypothetical ...    28   7.0  

>U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 8 protein.
          Length = 208

 Score =  307 bits (753), Expect = 6e-84
 Identities = 142/208 (68%), Positives = 170/208 (81%)
 Frame = +3

Query: 21  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 200
           MGISRD WHKR  TG  +    KKRK+ELGRPAANT++G  R+  VR+RGGN KYRALRL
Sbjct: 1   MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRL 60

Query: 201 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 380
           D+GNFSW SE +TRKTRI+D +YNA+NNELVRTKTLVK AI+ VDA PFRQWYE+HY LP
Sbjct: 61  DSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALP 120

Query: 381 LGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPG 560
           L RKK AKL+E + AI+NKKRS  T +KY  RQ+ A V+  L EQF+TGRLLA ++S PG
Sbjct: 121 LARKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARISSSPG 180

Query: 561 QCGRADGYILEGKELEFYLRKIKSKRAK 644
           Q G+A+GYILEGKEL+FYLRKI++K+AK
Sbjct: 181 QVGQANGYILEGKELDFYLRKIRAKKAK 208


>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
           resistance related protein1 protein.
          Length = 1540

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 189 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 293
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform e protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 189 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 293
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform c protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 189 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 293
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform b protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 189 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 293
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform a protein.
          Length = 1528

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 189 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 293
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
           resistance-associatedprotein protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 189 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 293
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>Z81513-2|CAB04186.2|  489|Caenorhabditis elegans Hypothetical
           protein F26D2.2 protein.
          Length = 489

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
 Frame = +3

Query: 246 TRIIDVVYNASNNELVRTKTLV---KNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEA 416
           T+I+ + Y A   E +  K L+   K +I+ +      +  +S+      RKK   +T  
Sbjct: 279 TKILKLKYEARQQEDIENKKLIEERKRSIIELLRRKIAEKKKSNTVKGSDRKK---ITSL 335

Query: 417 EEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRL 533
           ++AI  ++   +  +K L + + +K E  LEE+    +L
Sbjct: 336 KKAIAKEQEKLEKGKKELEQLQSSKTESDLEEEISAMQL 374


>AF515833-1|AAM55225.1|  489|Caenorhabditis elegans synaptonemal
           complex protein SYP-1 protein.
          Length = 489

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
 Frame = +3

Query: 246 TRIIDVVYNASNNELVRTKTLV---KNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEA 416
           T+I+ + Y A   E +  K L+   K +I+ +      +  +S+      RKK   +T  
Sbjct: 279 TKILKLKYEARQQEDIENKKLIEERKRSIIELLRRKIAEKKKSNTVKGSDRKK---ITSL 335

Query: 417 EEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRL 533
           ++AI  ++   +  +K L + + +K E  LEE+    +L
Sbjct: 336 KKAIAKEQEKLEKGKKELEQLQSSKTESDLEEEISAMQL 374


>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical
           protein K04H4.2c protein.
          Length = 1446

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 136 ALSESTPFVHVVEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMH 276
           ++ E+TP +   EI+ST   VW  V      ++   K +S   C +H
Sbjct: 524 SVGETTPVIIKEEIISTATKVWKKVDKTSGVSINKNKCLSTQRCDLH 570


>U88315-4|AAB42369.3|  778|Caenorhabditis elegans Hypothetical
           protein C37H5.5 protein.
          Length = 778

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/42 (35%), Positives = 27/42 (64%)
 Frame = +3

Query: 387 RKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEE 512
           +K G     A++  I K+++ KTA+KY  +++LA++E  L E
Sbjct: 424 KKSGKDALIAKKYQIKKEKASKTAKKY--KKQLARLEADLLE 463


>L14745-8|AAA27923.1|  244|Caenorhabditis elegans Tetraspanin family
           protein 1 protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -1

Query: 292 TNSLLDALYTTSMIRVLRV 236
           TNSL+DA+YTT+ +  L++
Sbjct: 133 TNSLIDAMYTTNSVNDLKI 151


>AL117205-7|CAB55160.1|  293|Caenorhabditis elegans Hypothetical
           protein Y116A8A.8 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 231 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 353
           CS +    I   ++A+NN ++  KT   N I     TPF Q
Sbjct: 51  CSIQNLMYIQKRFSANNNMIIALKTDTINEITESVCTPFEQ 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,925,471
Number of Sequences: 27780
Number of extensions: 308936
Number of successful extensions: 947
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -