Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10a15
         (239 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21319-6|AAC46676.3|  535|Caenorhabditis elegans Puf (pumilio/fb...    27   1.8  
Z81054-5|CAE17755.1|  313|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z81054-4|CAB02885.3|  321|Caenorhabditis elegans Hypothetical pr...    25   7.2  
M20244-1|AAA28108.1|  313|Caenorhabditis elegans protein ( C.ele...    25   7.2  
L02877-1|AAA50614.1|  321|Caenorhabditis elegans homeoprotein pr...    25   7.2  
Z68493-9|CAA92796.1|  338|Caenorhabditis elegans Hypothetical pr...    25   9.5  
U41510-5|AAK39384.3|  453|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>U21319-6|AAC46676.3|  535|Caenorhabditis elegans Puf (pumilio/fbf)
           domain-containingprotein 8 protein.
          Length = 535

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 55  LLWLATHYYFDSVFHKCAKYGLIYMK 132
           L   ATH Y  +V  KC + G +Y K
Sbjct: 419 LFEFATHKYSSNVIEKCLEQGAVYHK 444


>Z81054-5|CAE17755.1|  313|Caenorhabditis elegans Hypothetical
           protein F01D4.6b protein.
          Length = 313

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 52  GLLWLATHYYFDSVFHKCA 108
           G ++ + HYY D   H+CA
Sbjct: 64  GRIYCSQHYYKDHSIHRCA 82


>Z81054-4|CAB02885.3|  321|Caenorhabditis elegans Hypothetical
           protein F01D4.6a protein.
          Length = 321

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 52  GLLWLATHYYFDSVFHKCA 108
           G ++ + HYY D   H+CA
Sbjct: 72  GRIYCSQHYYKDHSIHRCA 90


>M20244-1|AAA28108.1|  313|Caenorhabditis elegans protein (
           C.elegans mec-3 geneencoding differentiation of the six
           touch receptor neurons,complete cds. ).
          Length = 313

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 52  GLLWLATHYYFDSVFHKCA 108
           G ++ + HYY D   H+CA
Sbjct: 64  GRIYCSQHYYKDHSIHRCA 82


>L02877-1|AAA50614.1|  321|Caenorhabditis elegans homeoprotein
           protein.
          Length = 321

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 52  GLLWLATHYYFDSVFHKCA 108
           G ++ + HYY D   H+CA
Sbjct: 72  GRIYCSQHYYKDHSIHRCA 90


>Z68493-9|CAA92796.1|  338|Caenorhabditis elegans Hypothetical
           protein C33A12.13 protein.
          Length = 338

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 168 RYKGYITLIFIPFHIYKPIFSTF 100
           R    I  + IPF I  PIFSTF
Sbjct: 151 RINTIIMRVAIPFAIVYPIFSTF 173


>U41510-5|AAK39384.3|  453|Caenorhabditis elegans Hypothetical
           protein ZC449.2 protein.
          Length = 453

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -2

Query: 151 NINIYSFSYI*AH-I*HICGKQNQNNNE--LLAIEDQHKSLIKIC 26
           NI  YS +Y   + I  + G+Q +N ++   LAI+D+H    K C
Sbjct: 265 NIPCYSLNYEPTNEICEMYGEQTRNESDSATLAIDDEHNFGDKFC 309


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,346,434
Number of Sequences: 27780
Number of extensions: 74042
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 12,740,198
effective HSP length: 59
effective length of database: 11,101,178
effective search space used: 222023560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)