Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0027
         (571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084268-2|AAL16324.1|  150|Caenorhabditis elegans Hypothetical ...    50   2e-06
U42439-3|AAA83507.1|  310|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U13644-4|AAB52682.1|  412|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>AC084268-2|AAL16324.1|  150|Caenorhabditis elegans Hypothetical
           protein Y92H12BL.5 protein.
          Length = 150

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
 Frame = +3

Query: 339 KMVKEKPNSIRIYDDEGFRRRAACICVR-SDAETEVLLVTSSRRPDNWIXXXXXXXXXXX 515
           K  + + N +R+ D +GFR RAA +C++ +  ET VLLV+  +    W+           
Sbjct: 6   KSRESERNKVRLRDTDGFRIRAAALCIKGTGKETLVLLVSGGKDGGKWVVPGGGIEKDEC 65

Query: 516 XXXTAMREVLEEAGV 560
               A RE++EEAGV
Sbjct: 66  AEEAAHRELMEEAGV 80


>U42439-3|AAA83507.1|  310|Caenorhabditis elegans Hypothetical
           protein F19C7.3 protein.
          Length = 310

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/21 (57%), Positives = 17/21 (80%), Gaps = 2/21 (9%)
 Frame = -1

Query: 193 FSTIKLHNVHKKS--NYNNNK 137
           ++T KL N+HKKS  N+NN+K
Sbjct: 71  YNTTKLDNIHKKSIFNFNNSK 91


>U13644-4|AAB52682.1|  412|Caenorhabditis elegans Hypothetical
           protein F56D2.3 protein.
          Length = 412

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -1

Query: 271 EKL*NEQNFLMINKR-HIRCILCRTYPFSTIKLHNVHKKSNYNNNKTTI 128
           +K+  EQ   M  K+ HIR +L         K  ++HK+    NNK T+
Sbjct: 247 KKIIGEQRMNMEQKQMHIRRVLANESDEIRSKFADIHKRLIMKNNKMTV 295


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,481,610
Number of Sequences: 27780
Number of extensions: 209684
Number of successful extensions: 421
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)