Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0003
         (342 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78542-6|CAB01749.2|  695|Caenorhabditis elegans Hypothetical pr...    30   0.50 
U13642-8|AAG00040.1|  428|Caenorhabditis elegans Similar to tran...    29   0.66 
U13642-7|AAZ32791.1|  446|Caenorhabditis elegans Similar to tran...    29   0.66 
Z68752-4|CAA92983.1|  447|Caenorhabditis elegans Hypothetical pr...    28   1.5  
Z81532-2|CAB04324.1|  290|Caenorhabditis elegans Hypothetical pr...    27   2.7  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    27   2.7  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    27   2.7  
Z81055-4|CAB02893.1|  824|Caenorhabditis elegans Hypothetical pr...    27   3.5  
Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical pr...    27   3.5  
Z68132-2|CAA92220.2|  762|Caenorhabditis elegans Hypothetical pr...    27   4.7  
AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical ...    26   6.1  
Z93383-11|CAI58635.1|  279|Caenorhabditis elegans Hypothetical p...    26   8.1  
Z81051-9|CAD21703.1|  531|Caenorhabditis elegans Hypothetical pr...    26   8.1  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    26   8.1  

>Z78542-6|CAB01749.2|  695|Caenorhabditis elegans Hypothetical
           protein F20D1.7 protein.
          Length = 695

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +3

Query: 66  IAIAAMAAVTNLSNVLKN-GNDNFTARMFTEVV-KNNPXKSVVLSAFSVLPPLAQLALAS 239
           +A+ ++  +    N+L+N G D+   R    V+ +NN  KS+ +  F  +P L  L L+ 
Sbjct: 124 MALTSLLELDLSDNMLENLGADSIHIRSIQRVILRNNQIKSIGVHVFRYMPTLKMLDLSG 183

Query: 240 DGET 251
           +  T
Sbjct: 184 NNMT 187


>U13642-8|AAG00040.1|  428|Caenorhabditis elegans Similar to
           transporter of divalentcations protein 1, isoform a
           protein.
          Length = 428

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +2

Query: 2   GHEGHSRDA-GHKHEDNHLFVYYRHRGNGSRH 94
           GH+ H  D+ GH H+ N     + H GN   H
Sbjct: 375 GHDDHGHDSHGHSHDHNEHDHGHSHGGNNDNH 406


>U13642-7|AAZ32791.1|  446|Caenorhabditis elegans Similar to
           transporter of divalentcations protein 1, isoform b
           protein.
          Length = 446

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +2

Query: 2   GHEGHSRDA-GHKHEDNHLFVYYRHRGNGSRH 94
           GH+ H  D+ GH H+ N     + H GN   H
Sbjct: 393 GHDDHGHDSHGHSHDHNEHDHGHSHGGNNDNH 424


>Z68752-4|CAA92983.1|  447|Caenorhabditis elegans Hypothetical
           protein T12G3.4 protein.
          Length = 447

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 110 HIREICDGCHCRDGDSKQTNDCLHVCGLRLSNV 12
           H  ++  G H  DG  K+ N C    GLRLS+V
Sbjct: 147 HAVQLAQGNHDCDGSYKKMNLCGRPLGLRLSDV 179


>Z81532-2|CAB04324.1|  290|Caenorhabditis elegans Hypothetical
           protein F36F2.2 protein.
          Length = 290

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 264 KALHGFHHQKLKLTEREEAAPKMPRGQRF 178
           K L   H  ++  T  EE+ P  P+GQRF
Sbjct: 163 KGLEEVHEIEVDKTVIEESIPNQPKGQRF 191


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = -2

Query: 155  FGKHSGCEVIVSIFEHIREICDG--CHCRDG---DSKQTNDCLHV 36
            FG + GC+ I +      ++ DG  CHCRDG   D +   +C+ +
Sbjct: 4095 FGNNGGCKHICT------DVRDGFYCHCRDGFRPDPQSPKECIDI 4133


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = -2

Query: 155  FGKHSGCEVIVSIFEHIREICDG--CHCRDG---DSKQTNDCLHV 36
            FG + GC+ I +      ++ DG  CHCRDG   D +   +C+ +
Sbjct: 4095 FGNNGGCKHICT------DVRDGFYCHCRDGFRPDPQSPKECIDI 4133


>Z81055-4|CAB02893.1|  824|Caenorhabditis elegans Hypothetical
           protein F01G10.5 protein.
          Length = 824

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 96  NLSNVLKNGNDNFTARMFTEVVKNNPXKSVVLS 194
           +L+  L  GNDN T      ++   P KSV  S
Sbjct: 658 SLAEFLSKGNDNETLEEMMRLIAQTPRKSVAFS 690


>Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical
           protein F57C7.4 protein.
          Length = 1484

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 150 TEVVKNNPXKSVVLSAFSVLPPLAQLAL 233
           T ++KN P KS V  +F++ P   QLA+
Sbjct: 674 TTIIKNVPSKSDVFVSFTIPPAGTQLAM 701


>Z68132-2|CAA92220.2|  762|Caenorhabditis elegans Hypothetical
           protein F09C8.2 protein.
          Length = 762

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 108 VLKNGNDNFTARMFTEVVKNNPXKSVVLSAFSVLP 212
           +L   +D    +  +EVV N P +++ LSAF   P
Sbjct: 359 LLTPNSDALLQKKLSEVVHNPPQRAIGLSAFPAFP 393


>AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical
           protein Y42H9AR.1 protein.
          Length = 506

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 2   GHEGHSRDAGHKHEDNH 52
           G  GHS D GH H   H
Sbjct: 317 GGHGHSHDGGHGHSHEH 333


>Z93383-11|CAI58635.1|  279|Caenorhabditis elegans Hypothetical
           protein F54B8.16 protein.
          Length = 279

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 154 SVNILAVKLSFPFLSTLERFVTAAIAAMAIVNKQMIVFMFV 32
           SV +  +K +F F+ TLERF++         N++ I F ++
Sbjct: 88  SVTMGIIKGTFAFMITLERFISVFFPIHYRNNRRKIPFYWI 128


>Z81051-9|CAD21703.1|  531|Caenorhabditis elegans Hypothetical
           protein C55A6.10 protein.
          Length = 531

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 73  SRQWQPSQISLMCSKMETITSQPECLP 153
           +R W+  Q+S  C K+   T  P+  P
Sbjct: 163 ARNWEVDQLSKQCEKLVAETGDPDMHP 189


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 5   HEGHSRDAGHKHEDNHLFVYYRHRGNGSRH 94
           H+GH +  G K  D+H   +  H G+  +H
Sbjct: 121 HDGHHKKHGRKEHDHH---HGHHHGHHHKH 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,402,327
Number of Sequences: 27780
Number of extensions: 135907
Number of successful extensions: 456
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)