Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120068.Seq
(804 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82260-3|CAB05131.1| 346|Caenorhabditis elegans Hypothetical pr... 29 5.1
U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z92834-1|CAB07382.1| 564|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical pr... 28 9.0
U12966-3|AAA20614.1| 128|Caenorhabditis elegans Temporarily ass... 28 9.0
AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical... 28 9.0
>Z82260-3|CAB05131.1| 346|Caenorhabditis elegans Hypothetical
protein C32H11.4 protein.
Length = 346
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 107 VGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYH 217
+GM P + + + +FA+ S D + SP P+ Y+
Sbjct: 146 IGMQPHVLNITQDLFAADFSSDKVALFVSPADPNDYY 182
>U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical
protein D1014.7 protein.
Length = 492
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 667 RSII*QLQWIFAKFDSTRSSARVLANRHGGIEFRNSATCIIDETGL 804
+ II +++W++ D T + + +HGGI SA C I+E +
Sbjct: 449 KQIINRVKWVYDVIDVTCEEKQKIYKKHGGI----SAPCWIEEKAM 490
>Z92834-1|CAB07382.1| 564|Caenorhabditis elegans Hypothetical
protein F39B2.1 protein.
Length = 564
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 550 NYKKHSRHHKPEHVLFACVARRIAFFRRDQ 639
N ++H+RHH E VL AC F RRD+
Sbjct: 308 NLRRHARHHSGEKVL-ACPFCARFFSRRDK 336
>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical protein
F26H11.2c protein.
Length = 2266
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/48 (25%), Positives = 31/48 (64%), Gaps = 4/48 (8%)
Frame = +1
Query: 220 RRMV-YLQQPPH---QRFKMSKMVLPIFDEDDNQFKMTIARHLVGNKE 351
RR++ + + PP+ +R++M ++P++DE + + + ++R+ G+ E
Sbjct: 1128 RRIIRHKEMPPYGQYERYEMEIEIIPLYDEPEEEDESWLSRNRGGSSE 1175
>Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical protein
F26H11.2b protein.
Length = 1693
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/48 (25%), Positives = 31/48 (64%), Gaps = 4/48 (8%)
Frame = +1
Query: 220 RRMV-YLQQPPH---QRFKMSKMVLPIFDEDDNQFKMTIARHLVGNKE 351
RR++ + + PP+ +R++M ++P++DE + + + ++R+ G+ E
Sbjct: 1128 RRIIRHKEMPPYGQYERYEMEIEIIPLYDEPEEEDESWLSRNRGGSSE 1175
>Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical protein
F26H11.2a protein.
Length = 1691
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/48 (25%), Positives = 31/48 (64%), Gaps = 4/48 (8%)
Frame = +1
Query: 220 RRMV-YLQQPPH---QRFKMSKMVLPIFDEDDNQFKMTIARHLVGNKE 351
RR++ + + PP+ +R++M ++P++DE + + + ++R+ G+ E
Sbjct: 1128 RRIIRHKEMPPYGQYERYEMEIEIIPLYDEPEEEDESWLSRNRGGSSE 1175
>Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 27.9 bits (59), Expect = 9.0
Identities = 25/82 (30%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Frame = +2
Query: 83 GNNMALMPVGMAPRQMRVNRCIFASIVSFDAC-ITYKSPCSPDAYHDDGW----FICNS- 244
GN+M + V R V AS+ + D C I + P Y W F C S
Sbjct: 89 GNSMVIFVVNRFKRMRNVTNIFLASLSTADLCLIWFCVPIMFMKYMSHTWSMGRFACYSV 148
Query: 245 HLINVLKCQKWFCPFSTKTTIN 310
H I C FC T T I+
Sbjct: 149 HYIQQFTC---FCSVLTMTMIS 167
>U12966-3|AAA20614.1| 128|Caenorhabditis elegans Temporarily
assigned gene nameprotein 174 protein.
Length = 128
Score = 27.9 bits (59), Expect = 9.0
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 547 RNYKKHSRHHKPEHVLFA 600
+++KKH H +PEHV +A
Sbjct: 72 KDHKKHMSHERPEHVEYA 89
>AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 27.9 bits (59), Expect = 9.0
Identities = 25/82 (30%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Frame = +2
Query: 83 GNNMALMPVGMAPRQMRVNRCIFASIVSFDAC-ITYKSPCSPDAYHDDGW----FICNS- 244
GN+M + V R V AS+ + D C I + P Y W F C S
Sbjct: 89 GNSMVIFVVNRFKRMRNVTNIFLASLSTADLCLIWFCVPIMFMKYMSHTWSMGRFACYSV 148
Query: 245 HLINVLKCQKWFCPFSTKTTIN 310
H I C FC T T I+
Sbjct: 149 HYIQQFTC---FCSVLTMTMIS 167
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,407,802
Number of Sequences: 27780
Number of extensions: 390867
Number of successful extensions: 993
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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