Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120065.Seq
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024849-1|AAK68546.2|  374|Caenorhabditis elegans Hypothetical ...    35   0.054
U53337-2|AAA96184.1|  639|Caenorhabditis elegans Hypothetical pr...    34   0.095
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as...    29   2.7  
U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z81051-12|CAB02861.2|  228|Caenorhabditis elegans Hypothetical p...    28   6.2  
AC017117-1|AAF16618.1|  338|Caenorhabditis elegans Hypothetical ...    28   8.2  

>AC024849-1|AAK68546.2|  374|Caenorhabditis elegans Hypothetical
           protein Y67D8B.1 protein.
          Length = 374

 Score = 35.1 bits (77), Expect = 0.054
 Identities = 19/73 (26%), Positives = 29/73 (39%)
 Frame = +3

Query: 288 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXXPCP 467
           M   KL   +CF   ++     +P D   ++PV  L  C H +C +C           CP
Sbjct: 1   MNLEKLSELLCFQCGKLYESITKPDDEAILVPV--LGACLHSICILC--ATGLESPNSCP 56

Query: 468 LCRVESLHFNVYS 506
           +C       N+ S
Sbjct: 57  ICENPEAFGNIIS 69


>U53337-2|AAA96184.1|  639|Caenorhabditis elegans Hypothetical
           protein R02E12.4 protein.
          Length = 639

 Score = 34.3 bits (75), Expect = 0.095
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = +3

Query: 288 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXXPCP 467
           +EF  +QC+ICF V    N+  +P+  L         TCKH +C+ C           CP
Sbjct: 19  LEFEDVQCHICFQV----NH--EPVTFL---------TCKHSICAGCAGRWLSSCSV-CP 62

Query: 468 LC--RVESLHFN 497
           +C  RV  +H N
Sbjct: 63  MCRTRVREIHLN 74


>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 77 protein.
          Length = 1004

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/60 (20%), Positives = 32/60 (53%)
 Frame = +2

Query: 551 VAQWNKINDNFDAASLASVLFEKSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQ 730
           + Q ++++ NF    L  + + + L+DD ++   A  +   + + +QA+ +K+ +   E+
Sbjct: 498 IQQLDQVHQNFMRYKLLMLRYSEYLIDDCDEKEKAQEAIQKLENVTQAVNQKMGLPTTEE 557


>U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical
           protein F42C5.4 protein.
          Length = 712

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
 Frame = +3

Query: 288 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXXPCP 467
           + FV L C+ C S+ +   +F     R  +       +C H LCS C           CP
Sbjct: 22  LHFVSLVCSGCDSLGDRDRFFDNDKKRPCV------SSCNHSLCSQC-----FDKFTECP 70

Query: 468 LCR---VESLHFNVYSITE 515
           +C+   V S ++    I E
Sbjct: 71  ICKEPLVRSENYQARKIVE 89


>Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical
           protein F17B5.6 protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +2

Query: 590 ASLASVLFEK-SLLDDAEDSNNAA--NSDDTMLSESQAILKKLQIDIAEQ 730
           + L + LFE  SLL  AE  N  A  N DDTML+E  +  ++    +AE+
Sbjct: 71  SGLGNQLFEVVSLLGMAEVLNRTAIFNKDDTMLNEKLSFFRETVPRVAEK 120


>Z81051-12|CAB02861.2|  228|Caenorhabditis elegans Hypothetical
           protein C55A6.1 protein.
          Length = 228

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +3

Query: 357 PIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXXPCPLCR 476
           PI +  +I    +  C H+ C +C           CP+CR
Sbjct: 13  PICQCKMIVPTTIPACGHKFCFICLKGVYMNDMGGCPMCR 52


>AC017117-1|AAF16618.1|  338|Caenorhabditis elegans Hypothetical
           protein F43C11.8 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = +3

Query: 288 MEFVKLQ-CNICFSVAEIKNYFMQPIDRLTIIPVLELDT----CKHQLCSMCXXXXXXXX 452
           M F++ + CN  FS A  +N   + + +L ++P L+L      C H +C  C        
Sbjct: 1   MSFIECEICNEDFSSATDEN-IPRILSKL-LLPFLKLKNKNSGCGHTICHGCAEKLLQNS 58

Query: 453 XXPCPLCR 476
              CP CR
Sbjct: 59  MILCPFCR 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,918,299
Number of Sequences: 27780
Number of extensions: 303791
Number of successful extensions: 831
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)