Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120057.Seq
         (788 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92796-5|CAB07233.1|  518|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z81531-5|CAB04319.1| 1152|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>Z92796-5|CAB07233.1|  518|Caenorhabditis elegans Hypothetical
           protein H25K10.6 protein.
          Length = 518

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +3

Query: 471 VYKNETCQMQQSSTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAM 650
           +Y+ +   +  SS    I++S   ++   E+A  D +NLS L   ET+  K +    M M
Sbjct: 230 LYELKLVNISYSSLNLSILSSIRNVRGDVEIAATDFENLSFLTGLETITSKHSYLSKMTM 289

Query: 651 LS 656
           L+
Sbjct: 290 LN 291


>Z81531-5|CAB04319.1| 1152|Caenorhabditis elegans Hypothetical
           protein F36D3.5 protein.
          Length = 1152

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 21/71 (29%), Positives = 34/71 (47%)
 Frame = +3

Query: 504 SSTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLSTLEMTQPLL 683
           SST+ E ++  EK+Q    L E ++K+ SS +   T    L L    A++  +  +  +L
Sbjct: 531 SSTMHEYLDRLEKVQNNLALVEKEIKS-SSSQINATNNPVLLLKTPQALIKNIGTSTRVL 589

Query: 684 EIFRNKADTRQ 716
           E   N    RQ
Sbjct: 590 EDLENVRQHRQ 600


>U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical
           protein D1044.7 protein.
          Length = 400

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 211 SPQTI*TG*LQTCFCHFGCSSNYCFNNYVC 300
           SPQ   +G + TCF +  C+S Y  +N  C
Sbjct: 81  SPQVSASGQVVTCFTNSQCASGYICSNGAC 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,648,076
Number of Sequences: 27780
Number of extensions: 289005
Number of successful extensions: 664
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)