Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120056.Seq
(730 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036706-10|AAM97948.1| 633|Caenorhabditis elegans Hypothetical... 135 3e-32
AF036706-9|AAK39281.1| 681|Caenorhabditis elegans Hypothetical ... 135 3e-32
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ... 31 1.1
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 2.6
U56963-8|AAB38121.1| 155|Caenorhabditis elegans Hypothetical pr... 29 3.4
AC024796-9|AAK29893.2| 454|Caenorhabditis elegans Hypothetical ... 29 3.4
Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical p... 29 4.5
Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical p... 29 4.5
U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily ass... 29 4.5
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 29 4.5
Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical pr... 28 7.9
X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomera... 28 7.9
U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like pr... 28 7.9
U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like pr... 28 7.9
U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like pr... 28 7.9
AB023496-1|BAA97564.1| 793|Caenorhabditis elegans kinesin like ... 28 7.9
>AF036706-10|AAM97948.1| 633|Caenorhabditis elegans Hypothetical
protein T07A9.9b protein.
Length = 633
Score = 135 bits (326), Expect = 3e-32
Identities = 58/84 (69%), Positives = 74/84 (88%)
Frame = +2
Query: 2 GHTDYKYLRWQVIDTPGILDHPLEERNVIEMQAVTALAHLRAAILYFIDPSEQCGHSIED 181
GH DY++LRWQVIDTPGILD PLE+RN IEMQAVTALAHL+A++L+ +D SEQC SIE+
Sbjct: 209 GHLDYRFLRWQVIDTPGILDQPLEDRNTIEMQAVTALAHLKASVLFMMDVSEQCDRSIEE 268
Query: 182 QISLFESIKPLFTSKPLIVVLNKM 253
Q+ LFESI+PLF +KP+++ LNK+
Sbjct: 269 QLHLFESIRPLFANKPVLIGLNKV 292
Score = 62.1 bits (144), Expect = 4e-10
Identities = 24/44 (54%), Positives = 35/44 (79%)
Frame = +3
Query: 597 KENRKRKLERDIEVELGDDYVLDLKKNYTEIPEDERYDVIPEIW 728
++ R+LER+IE+E+ DDY+LDLKK+Y DE+YD++PEIW
Sbjct: 439 RDENTRRLEREIELEMQDDYILDLKKHYMLKNPDEKYDIVPEIW 482
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 4/50 (8%)
Frame = +1
Query: 370 VPVMRMSTVTEEGVQEVKIEACERLLGHRVTEKMRTKKV----DGILNRL 507
+P++ ST+T+EGV ++ AC+ LL RV K++ KK+ D +LNR+
Sbjct: 316 IPIIETSTLTQEGVMGLRDRACDELLAQRVEAKIQAKKITNVEDCVLNRV 365
>AF036706-9|AAK39281.1| 681|Caenorhabditis elegans Hypothetical
protein T07A9.9a protein.
Length = 681
Score = 135 bits (326), Expect = 3e-32
Identities = 58/84 (69%), Positives = 74/84 (88%)
Frame = +2
Query: 2 GHTDYKYLRWQVIDTPGILDHPLEERNVIEMQAVTALAHLRAAILYFIDPSEQCGHSIED 181
GH DY++LRWQVIDTPGILD PLE+RN IEMQAVTALAHL+A++L+ +D SEQC SIE+
Sbjct: 209 GHLDYRFLRWQVIDTPGILDQPLEDRNTIEMQAVTALAHLKASVLFMMDVSEQCDRSIEE 268
Query: 182 QISLFESIKPLFTSKPLIVVLNKM 253
Q+ LFESI+PLF +KP+++ LNK+
Sbjct: 269 QLHLFESIRPLFANKPVLIGLNKV 292
Score = 62.1 bits (144), Expect = 4e-10
Identities = 24/44 (54%), Positives = 35/44 (79%)
Frame = +3
Query: 597 KENRKRKLERDIEVELGDDYVLDLKKNYTEIPEDERYDVIPEIW 728
++ R+LER+IE+E+ DDY+LDLKK+Y DE+YD++PEIW
Sbjct: 439 RDENTRRLEREIELEMQDDYILDLKKHYMLKNPDEKYDIVPEIW 482
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 4/50 (8%)
Frame = +1
Query: 370 VPVMRMSTVTEEGVQEVKIEACERLLGHRVTEKMRTKKV----DGILNRL 507
+P++ ST+T+EGV ++ AC+ LL RV K++ KK+ D +LNR+
Sbjct: 316 IPIIETSTLTQEGVMGLRDRACDELLAQRVEAKIQAKKITNVEDCVLNRV 365
>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
protein Y32H12A.8 protein.
Length = 3901
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Frame = +3
Query: 546 PPVLPPSVLAKKEKQAEKENRKRKLERDIEVELGDDYVLDLKKNYTEIPE--DERYD 710
PP P + + +E+Q E +RKRKLE+ I+ E D+ +LD ++ E E DE Y+
Sbjct: 1015 PPPPPKNEVRVQEEQLEG-SRKRKLEQ-IQEEDEDEEILDEEEELFEEEEEVDEEYE 1069
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +3
Query: 531 DDKPRPPVL-----PPSVLAKKEKQAEKENRKRKLERDIEVELGDDYVLDLKKNYTEIPE 695
+ K +PP+L S A ++++ KR LE D + ++GDD + K E E
Sbjct: 72 EKKEKPPILNYLDDSDSDSADFSSSSKRKRSKRALENDSDEDVGDDGKEEEMKKKKEKEE 131
Query: 696 DER 704
+ER
Sbjct: 132 EER 134
>U56963-8|AAB38121.1| 155|Caenorhabditis elegans Hypothetical
protein T13A10.1 protein.
Length = 155
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 540 PRPPVLPPSVLAKKEKQAEKENRKRKLERDIE 635
P PP PP K EK+ E + K K++ +++
Sbjct: 51 PAPPPPPPEAEKKPEKEEEPKKEKSKMKSEVK 82
>AC024796-9|AAK29893.2| 454|Caenorhabditis elegans Hypothetical
protein Y48G1C.1 protein.
Length = 454
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +3
Query: 531 DDKPRPPVLPPSVLAKKEKQAEKENRKRKLERDIEVELGDDYVLDLKKNYTEIPEDERYD 710
+ K PPV ++ K K+ + + RK+ +V G + +++ + +E+ ED+ D
Sbjct: 34 NQKEHPPVQEIKTVSSKSKE-HRVSSSRKIPDHFDV--GPRFYMNVPADGSEVFEDDEKD 90
Query: 711 VIPEIW 728
V E W
Sbjct: 91 VENECW 96
>Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical
protein T07C4.10 protein.
Length = 1013
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/36 (30%), Positives = 24/36 (66%)
Frame = +3
Query: 567 VLAKKEKQAEKENRKRKLERDIEVELGDDYVLDLKK 674
++ + K+ EKEN++ +R + E DD++L+++K
Sbjct: 901 IMDRNVKETEKENKRLLRKRTEDKERMDDFMLNIRK 936
>Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical
protein T07C4.10 protein.
Length = 1013
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/36 (30%), Positives = 24/36 (66%)
Frame = +3
Query: 567 VLAKKEKQAEKENRKRKLERDIEVELGDDYVLDLKK 674
++ + K+ EKEN++ +R + E DD++L+++K
Sbjct: 901 IMDRNVKETEKENKRLLRKRTEDKERMDDFMLNIRK 936
>U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily assigned
gene nameprotein 177 protein.
Length = 1667
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/50 (28%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Frame = +3
Query: 570 LAKKEKQAEKENRKRKLERDIEVELGDDYVL--DLKKNYTEIPEDERYDV 713
+ KK+K+ EKEN+K K +++I+ E +++ +LK++ I + + +++
Sbjct: 997 VTKKKKKKEKENKKNKGKKEIKREEKVEFICVPELKESLENIVKIQDFEL 1046
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Frame = -3
Query: 491 PSTFFVRIFSVTRCPSSL--SQASILTSCT-----PSSVTVDIRITGTTDRSEFESALTR 333
PST +V P+++ S+++++T+ T PS+ + T T + S+ T
Sbjct: 395 PSTVVTAPSTVVTVPTTVMTSRSTVITTPTTGGSSPSTAGTSLASTAVTTETSIGSSSTP 454
Query: 332 FPLEHVSVRSSS-NCFLLRDSSSGLTTPS 249
P + S+ SS + + S++G T+P+
Sbjct: 455 LPSQSTSLSMSSLSTYTPSSSTAGATSPA 483
>Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical
protein M01E5.5a protein.
Length = 806
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 576 KKEKQAEKENRKRKLERDIEVELGDDYVLDLKKNYTEIPEDER 704
K++K+ EKENRK K E D + + DD KK ++ E +
Sbjct: 174 KEKKRLEKENRKIKEEDDEDSDDEDDEKAKKKKRKSKGAEKSK 216
>X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomerase
protein.
Length = 806
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 576 KKEKQAEKENRKRKLERDIEVELGDDYVLDLKKNYTEIPEDER 704
K++K+ EKENRK K E D + + DD KK ++ E +
Sbjct: 174 KEKKRLEKENRKIKEEDDEDSDDEDDEKAKKKKRKSKGAEKSK 216
>U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like protein
protein 4,isoform c protein.
Length = 1576
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 394 VTEEGVQEVKIEACERLLGHRVTEKMRTKKVDGILNRL 507
VT+E + E E LLG +T ++R K+ G+ +L
Sbjct: 913 VTQEEMDETSNNGPETLLGKTITCRVRIKRASGLPEKL 950
>U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like protein
protein 4,isoform b protein.
Length = 1610
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 394 VTEEGVQEVKIEACERLLGHRVTEKMRTKKVDGILNRL 507
VT+E + E E LLG +T ++R K+ G+ +L
Sbjct: 913 VTQEEMDETSNNGPETLLGKTITCRVRIKRASGLPEKL 950
>U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like protein
protein 4,isoform a protein.
Length = 1595
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 394 VTEEGVQEVKIEACERLLGHRVTEKMRTKKVDGILNRL 507
VT+E + E E LLG +T ++R K+ G+ +L
Sbjct: 913 VTQEEMDETSNNGPETLLGKTITCRVRIKRASGLPEKL 950
>AB023496-1|BAA97564.1| 793|Caenorhabditis elegans kinesin like
protein KLP-4 protein.
Length = 793
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 394 VTEEGVQEVKIEACERLLGHRVTEKMRTKKVDGILNRL 507
VT+E + E E LLG +T ++R K+ G+ +L
Sbjct: 333 VTQEEMDETSNNGPETLLGKTITCRVRIKRASGLPEKL 370
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,482,138
Number of Sequences: 27780
Number of extensions: 270440
Number of successful extensions: 1352
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1351
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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