Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120046.Seq
         (772 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U12966-3|AAA20614.1|  128|Caenorhabditis elegans Temporarily ass...    32   0.52 
U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like pr...    29   2.8  
U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like pr...    29   2.8  
U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like pr...    29   2.8  
U00046-7|AAC47048.1|  211|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z82260-3|CAB05131.1|  346|Caenorhabditis elegans Hypothetical pr...    29   4.8  

>U12966-3|AAA20614.1|  128|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 174 protein.
          Length = 128

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 486 LYTAFTQLKKHSRHHKPEHVLFA 554
           +Y AF   KKH  H +PEHV +A
Sbjct: 67  MYAAFKDHKKHMSHERPEHVEYA 89


>U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like
           protein protein 4,isoform c protein.
          Length = 1576

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 252 RDNQFKMTIARHLVGNKERGIKRILIPSATNYQEVFN-LNSMMQAEQLIFHLIYNNEEAV 428
           RD+     +   L GN    +   L P+A NY+E  + L    +A++++ H I N +   
Sbjct: 334 RDSVLTWLLKDSLGGNSRTVMIATLSPAADNYEETLSTLRYADRAKKIVNHAIINEDPNA 393

Query: 429 NVI 437
            VI
Sbjct: 394 RVI 396


>U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like
           protein protein 4,isoform b protein.
          Length = 1610

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 252 RDNQFKMTIARHLVGNKERGIKRILIPSATNYQEVFN-LNSMMQAEQLIFHLIYNNEEAV 428
           RD+     +   L GN    +   L P+A NY+E  + L    +A++++ H I N +   
Sbjct: 334 RDSVLTWLLKDSLGGNSRTVMIATLSPAADNYEETLSTLRYADRAKKIVNHAIINEDPNA 393

Query: 429 NVI 437
            VI
Sbjct: 394 RVI 396


>U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like
           protein protein 4,isoform a protein.
          Length = 1595

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 252 RDNQFKMTIARHLVGNKERGIKRILIPSATNYQEVFN-LNSMMQAEQLIFHLIYNNEEAV 428
           RD+     +   L GN    +   L P+A NY+E  + L    +A++++ H I N +   
Sbjct: 334 RDSVLTWLLKDSLGGNSRTVMIATLSPAADNYEETLSTLRYADRAKKIVNHAIINEDPNA 393

Query: 429 NVI 437
            VI
Sbjct: 394 RVI 396


>U00046-7|AAC47048.1|  211|Caenorhabditis elegans Hypothetical
           protein R13F6.8 protein.
          Length = 211

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 574 AIRRATHANKTCSGLWCLECFLSCVNAVYNALRAACE 464
           + +RA  A  + +GLWC++  LS      N  +  CE
Sbjct: 28  SFKRAPSAKNSMTGLWCVKAILSDTLISPNQAKQVCE 64


>Z82260-3|CAB05131.1|  346|Caenorhabditis elegans Hypothetical
           protein C32H11.4 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 61  VGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYH 171
           +GM P  + + + +FA+  S D    + SP  P+ Y+
Sbjct: 146 IGMQPHVLNITQDLFAADFSSDKVALFVSPADPNDYY 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,940,412
Number of Sequences: 27780
Number of extensions: 373390
Number of successful extensions: 1036
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)