Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0029
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031627-22|CAI79188.1|  213|Caenorhabditis elegans Hypothetical...    31   0.61 
Z92784-3|CAB07194.1|  318|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AL132877-18|CAC70116.1|  362|Caenorhabditis elegans Hypothetical...    27   10.0 
AL032643-7|CAA21659.2|  362|Caenorhabditis elegans Hypothetical ...    27   10.0 

>AL031627-22|CAI79188.1|  213|Caenorhabditis elegans Hypothetical
           protein Y102A5C.36 protein.
          Length = 213

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +2

Query: 317 YNFIYTNSNCFHRLCLTLRSNIFLGGNRNYKSIICNPLFRNYISKLNL 460
           YNF+Y + NC   + ++L  N+FL   R Y  I C   F +++ KL L
Sbjct: 52  YNFLYFSPNCVETIFVSLGRNLFLCLQRRY--IHC---FFHFLLKLTL 94


>Z92784-3|CAB07194.1|  318|Caenorhabditis elegans Hypothetical
           protein F31C3.4 protein.
          Length = 318

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 207 FELFNHSLHFGKYNLLYKKLFQYLLCNILLKII 109
           FE+  H LH GKY +L K  F Y+   I++  I
Sbjct: 280 FEVIPHELHNGKYRIL-KMFFIYMGFAIVVAFI 311


>AL132877-18|CAC70116.1|  362|Caenorhabditis elegans Hypothetical
           protein Y54E5A.1 protein.
          Length = 362

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +1

Query: 355 VMSYPEVKYLFGGQP*LQIYYLQSLI 432
           V  YPEVK LFG  P L+ Y + SL+
Sbjct: 27  VKKYPEVKKLFGVDPSLK-YVVSSLV 51


>AL032643-7|CAA21659.2|  362|Caenorhabditis elegans Hypothetical
           protein Y54E5A.1 protein.
          Length = 362

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +1

Query: 355 VMSYPEVKYLFGGQP*LQIYYLQSLI 432
           V  YPEVK LFG  P L+ Y + SL+
Sbjct: 27  VKKYPEVKKLFGVDPSLK-YVVSSLV 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,256,265
Number of Sequences: 27780
Number of extensions: 188628
Number of successful extensions: 406
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)