Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0015
         (668 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41038-3|AAK29708.3|  623|Caenorhabditis elegans Cadherin family...    32   0.42 
Z81509-7|CAJ85751.1|  544|Caenorhabditis elegans Hypothetical pr...    31   0.98 
Z81509-6|CAB04153.2|  431|Caenorhabditis elegans Hypothetical pr...    31   0.98 
U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule los...    30   1.7  
AL032644-5|CAA21669.2|  517|Caenorhabditis elegans Hypothetical ...    29   3.9  
U29536-5|AAA68794.1|  246|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>U41038-3|AAK29708.3|  623|Caenorhabditis elegans Cadherin family
           protein 9 protein.
          Length = 623

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 438 RWKEGHSRSCSCWCDQITTLTGLPVAT 518
           +WK GH RS  CW +  TT TG+ + T
Sbjct: 548 KWKTGHRRSSICWLNG-TTDTGISITT 573


>Z81509-7|CAJ85751.1|  544|Caenorhabditis elegans Hypothetical
           protein F21A3.2b protein.
          Length = 544

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 499 VRVVIWSHQQLHDRLWPSFHLAHTKHKGTEIP 404
           V V +W+H+  ++RLWP ++   T + GT  P
Sbjct: 390 VDVELWAHEHSYERLWPVYN--RTVYNGTRHP 419


>Z81509-6|CAB04153.2|  431|Caenorhabditis elegans Hypothetical
           protein F21A3.2a protein.
          Length = 431

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 499 VRVVIWSHQQLHDRLWPSFHLAHTKHKGTEIP 404
           V V +W+H+  ++RLWP ++   T + GT  P
Sbjct: 277 VDVELWAHEHSYERLWPVYN--RTVYNGTRHP 306


>U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule loss
           protein 4 protein.
          Length = 1392

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 9/88 (10%)
 Frame = -1

Query: 647 VPQCFRQSIFFVAFFITEGRILELTLASRELFPPRPVLNFTWGGCDW*T---------S* 495
           V  C      F  F + +G +L        + P R +++ TWGG  W T         + 
Sbjct: 131 VTVCIGSQAAFAIFGLADGNLL--------VTPIRLLIDVTWGGSSWATTTVIDLSLPTV 182

Query: 494 GGYLVTPAAT*SAVAFFPPCPYKAQGNR 411
              L TP  T   V+ FPPC      N+
Sbjct: 183 DPCLATPTCTKCFVSNFPPCTMAVVANK 210


>AL032644-5|CAA21669.2|  517|Caenorhabditis elegans Hypothetical
           protein Y51H1A.5 protein.
          Length = 517

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = -2

Query: 490 VIWSHQ-QLHDRLWPSFHL 437
           VI+ HQ Q HD+ WPS+H+
Sbjct: 9   VIFDHQEQRHDQPWPSYHI 27


>U29536-5|AAA68794.1|  246|Caenorhabditis elegans Hypothetical
           protein F45E12.1 protein.
          Length = 246

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 146 LFCKLHSFINSFI-WL*YTSRHYCSHPLIPPHS 51
           +FC L  F N F+ +   TSR YC + ++  HS
Sbjct: 8   VFCFLAGFFNFFLLYFRKTSRAYCKYQVVKYHS 40


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 468  SCWCDQITTLTGLPVATAPREVEDRTRWKQL 560
            SC C  I  LTGLP  T P +  D   +K+L
Sbjct: 993  SCRCTDIYELTGLPKKTPPSD-NDMLTYKKL 1022


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 468  SCWCDQITTLTGLPVATAPREVEDRTRWKQL 560
            SC C  I  LTGLP  T P +  D   +K+L
Sbjct: 993  SCRCTDIYELTGLPKKTPPSD-NDMLTYKKL 1022


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,417,111
Number of Sequences: 27780
Number of extensions: 257295
Number of successful extensions: 559
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)