Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_A02
(912 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical... 34 0.16
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 31 0.86
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog... 31 1.1
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro... 31 1.1
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.5
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.5
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.5
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 30 2.6
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 30 2.6
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 30 2.6
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 30 2.6
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 4.6
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 4.6
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 28 8.1
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 8.1
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 8.1
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 8.1
>AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical
protein F41E6.11 protein.
Length = 316
Score = 33.9 bits (74), Expect = 0.16
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +1
Query: 340 PCSXNPLPF*XXPPPRSPXPAXXP-FSPXXXSXAXFPPPTGV 462
PC+ P P P P +P PA P + P + PPPT V
Sbjct: 91 PCATPPCPLPYIPEPVAPVPAPAPVYEPYACAAPPCPPPTPV 132
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 31.5 bits (68), Expect = 0.86
Identities = 18/48 (37%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Frame = +1
Query: 334 GGPCSXNPLPF*XXPPPR-SPXPAXXPFSPXXXSXAXFPPPTGVXPXP 474
GG CS P P PPP +P P P P PPP P P
Sbjct: 20 GGCCSMGPPPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPP 67
>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
domain protein 1 protein.
Length = 1346
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +1
Query: 379 PPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXP 474
PP P P+ P P PPP G+ P P
Sbjct: 770 PPPPPPPSAIPLPPRLQGGIPPPPPLGIIPPP 801
>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
protein.
Length = 1346
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +1
Query: 379 PPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXP 474
PP P P+ P P PPP G+ P P
Sbjct: 770 PPPPPPPSAIPLPPRLQGGIPPPPPLGIIPPP 801
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/61 (36%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Frame = +1
Query: 322 PINXGGPCSXNP--LPF*XXPPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXPX*KXPXG 495
PI G P P LP PP P P P P PPP G P P P G
Sbjct: 721 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLP--PISGGPPPPPPPPGGCPPPPPPPPPG 778
Query: 496 G 498
G
Sbjct: 779 G 779
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/61 (36%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Frame = +1
Query: 322 PINXGGPCSXNP--LPF*XXPPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXPX*KXPXG 495
PI G P P LP PP P P P P PPP G P P P G
Sbjct: 721 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLP--PISGGPPPPPPPPGGCPPPPPPPPPG 778
Query: 496 G 498
G
Sbjct: 779 G 779
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/61 (36%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Frame = +1
Query: 322 PINXGGPCSXNP--LPF*XXPPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXPX*KXPXG 495
PI G P P LP PP P P P P PPP G P P P G
Sbjct: 304 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLP--PISGGPPPPPPPPGGCPPPPPPPPPG 361
Query: 496 G 498
G
Sbjct: 362 G 362
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical
protein C02C6.1b protein.
Length = 838
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/58 (32%), Positives = 22/58 (37%)
Frame = +1
Query: 340 PCSXNPLPF*XXPPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXPX*KXPXGGXSPXL 513
P +P+P P P P P P A PPP G+ P P GG P L
Sbjct: 760 PSGPSPVP---RPAPAPPGGRQAPMPPRGGPGA--PPPPGMRPPPGAPGGGGGMYPPL 812
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/58 (32%), Positives = 22/58 (37%)
Frame = +1
Query: 340 PCSXNPLPF*XXPPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXPX*KXPXGGXSPXL 513
P +P+P P P P P P A PPP G+ P P GG P L
Sbjct: 760 PSGPSPVP---RPAPAPPGGRQAPMPPRGGPGA--PPPPGMRPPPGAPGGGGGMYPPL 812
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +1
Query: 376 PPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXP 474
PPPRSP P P +P S PP T P P
Sbjct: 150 PPPRSPPPRRPPMTP--PSPQRRPPRTPPSPEP 180
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/58 (32%), Positives = 22/58 (37%)
Frame = +1
Query: 340 PCSXNPLPF*XXPPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXPX*KXPXGGXSPXL 513
P +P+P P P P P P A PPP G+ P P GG P L
Sbjct: 760 PSGPSPVP---RPAPAPPGGRQAPMPPRGGPGA--PPPPGMRPPPGAPGGGGGMYPPL 812
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/58 (32%), Positives = 22/58 (37%)
Frame = +1
Query: 340 PCSXNPLPF*XXPPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXPX*KXPXGGXSPXL 513
P +P+P P P P P P A PPP G+ P P GG P L
Sbjct: 760 PSGPSPVP---RPAPAPPGGRQAPMPPRGGPGA--PPPPGMRPPPGAPGGGGGMYPPL 812
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +1
Query: 376 PPPRSPXPAXXPFSPXXXSXAXFPPPTGVXP 468
PPP P P P P S +PPP P
Sbjct: 274 PPPMPPTPGMTPRPPPPPSSGMWPPPPPPPP 304
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +1
Query: 376 PPPRSPXPAXXPFSPXXXSXAXFPPPTGVXP 468
PPP P P P P S +PPP P
Sbjct: 284 PPPMPPTPGMTPRPPPPPSSGMWPPPPPPPP 314
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 28.3 bits (60), Expect = 8.1
Identities = 20/63 (31%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Frame = +1
Query: 322 PINXGGPCSXNPLPF*XX-PPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXPX*KXPXGG 498
P N G P +P PPP P PA P P A P G P P G
Sbjct: 129 PGNPGAPGKGAAVPCEAKTPPPCKPCPAGPPGPPGPDGPAGPAGPDGEAGSPAAPSPPGP 188
Query: 499 XSP 507
P
Sbjct: 189 PGP 191
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/56 (39%), Positives = 22/56 (39%)
Frame = +1
Query: 340 PCSXNPLPF*XXPPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXPX*KXPXGGXSP 507
P PL PPP P A P P S PPPTG P P P GG P
Sbjct: 243 PKGSPPLAGSGSPPP--PPAAGSPPPPRTGSPP--PPPTGSPPPP----PAGGSPP 290
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/56 (39%), Positives = 22/56 (39%)
Frame = +1
Query: 340 PCSXNPLPF*XXPPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXPX*KXPXGGXSP 507
P PL PPP P A P P S PPPTG P P P GG P
Sbjct: 264 PKGSPPLAGSGSPPP--PPAAGSPPPPRTGSPP--PPPTGSPPPP----PAGGSPP 311
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/56 (39%), Positives = 22/56 (39%)
Frame = +1
Query: 340 PCSXNPLPF*XXPPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXPX*KXPXGGXSP 507
P PL PPP P A P P S PPPTG P P P GG P
Sbjct: 249 PKGSPPLAGSGSPPP--PPAAGSPPPPRTGSPP--PPPTGSPPPP----PAGGSPP 296
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,038,573
Number of Sequences: 27780
Number of extensions: 163403
Number of successful extensions: 551
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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