Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_A04
         (847 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr...    28   9.6  

>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical protein
            F26C11.3 protein.
          Length = 1317

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 11/96 (11%)
 Frame = +2

Query: 62   TSTYSQTLNG*ELRLTRTNGVS-FQACRVVTWRKRSSPFKTPA*SGSRTLPGGEFDWGGT 238
            T+   Q +       TRT   S  Q C+  +  +  + F  P    +RTLP GE     +
Sbjct: 1039 TTVLMQLIYNPSTNKTRTETTSDAQGCKATSTTQTPTTFNWPTGGTTRTLPSGEIILSES 1098

Query: 239  SVKE*RRC----------PKASSARTETSRGAKGQK 316
             +   + C          P  ++ RTET+  A+G K
Sbjct: 1099 LIAY-KNCTTVLMQLIYNPSKNTTRTETTSDAEGCK 1133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,861,333
Number of Sequences: 27780
Number of extensions: 370758
Number of successful extensions: 774
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)