Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10391
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    21   7.0  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    21   7.0  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    21   7.0  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    21   7.0  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   7.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.0  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   9.3  

>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 205 SCHQTRPSCSRRKNRQTESIY 267
           SC + R    R+K+RQ E +Y
Sbjct: 3   SCSRDRNREYRKKDRQYEKLY 23


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 205 SCHQTRPSCSRRKNRQTESIY 267
           SC + R    R+K+RQ E +Y
Sbjct: 3   SCSRDRNREYRKKDRQYEKLY 23


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 205 SCHQTRPSCSRRKNRQTESIY 267
           SC + R    R+K+RQ E +Y
Sbjct: 3   SCSRDRNREYRKKDRQYEKLY 23


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 205 SCHQTRPSCSRRKNRQTESIY 267
           SC + R    R+K+RQ E +Y
Sbjct: 3   SCSRDRNREYRKKDRQYEKLY 23


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
          protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 60 SAIVERWALIDSQAQKKKK 4
          SAI+   A+ DSQAQ+K K
Sbjct: 7  SAILFLLAISDSQAQEKLK 25


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +1

Query: 505 VYQFEEVTGVTRSESHTPSLARSPASVVL 591
           +YQ    +G+T++  H+  +A  P  V +
Sbjct: 630 IYQHNVASGLTKARGHSLLVADRPNFVTI 658


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 250 VDFSFANKTAEFGDRNPLFLVF 185
           V++     T   GD  P+FL F
Sbjct: 363 VEYGIIGPTTCMGDHKPVFLEF 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,965
Number of Sequences: 438
Number of extensions: 3328
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)