Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20109
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    28   0.060
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    28   0.060
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   3.9  

>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 28.3 bits (60), Expect = 0.060
 Identities = 21/71 (29%), Positives = 32/71 (45%)
 Frame = +3

Query: 255 LKCLQDIKVQMHEDPISFTLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYS 434
           +KC+      M  D I +    +F  N      +L +EY+    P  ES +E    E+ S
Sbjct: 72  MKCIMIATKAMKNDVILWD---FFVKN---ARMILLEEYI----PRVESVVETCKKEVTS 121

Query: 435 CKGCEINWNAG 467
            +GCE+ W  G
Sbjct: 122 TEGCEVAWQFG 132


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 28.3 bits (60), Expect = 0.060
 Identities = 21/71 (29%), Positives = 32/71 (45%)
 Frame = +3

Query: 255 LKCLQDIKVQMHEDPISFTLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYS 434
           +KC+      M  D I +    +F  N      +L +EY+    P  ES +E    E+ S
Sbjct: 46  MKCIMIATKAMKNDVILWD---FFVKN---ARMILLEEYI----PRVESVVETCKKEVTS 95

Query: 435 CKGCEINWNAG 467
            +GCE+ W  G
Sbjct: 96  TEGCEVAWQFG 106


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 40 ECLNPWRDDTEEEELA 87
          + L  W DD++EEEL+
Sbjct: 34 QMLGIWADDSDEEELS 49


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +1

Query: 7   EVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEG 120
           E +  ++P D+EC          E   R   N+ IT G
Sbjct: 194 ETHIDWQPEDEECTEATAGAVVLETCQRNSNNSTITAG 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,954
Number of Sequences: 438
Number of extensions: 3038
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)