Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30167.Seq
         (898 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   2.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   5.0  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   8.7  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   8.7  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    22   8.7  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 271 KRIASQTPFKHFEVSILWVISFIIIF 194
           K    ++ ++HF   I W+  FI+IF
Sbjct: 393 KSRTKESAWRHFAAIIEWLSFFIVIF 418


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
 Frame = +2

Query: 197 YNNETNYPQYAHFEMLERCLTGYPLAINATDIKVKEVDFNPEFISRVIPKLDW---EVLW 367
           Y+N   +PQ   F  L      Y   INA ++++ +   +   I     K+D    E L 
Sbjct: 303 YSNGVTFPQRNRFSSLPYYKYKYLNVINALEMRLMDAIDSGYLIDEYGKKIDIYTPEGLN 362

Query: 368 VAADSI-GHSDGLPRSLENKYD 430
           +  + I G+SD +       YD
Sbjct: 363 MLGNVIEGNSDSINTKFYGMYD 384


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 230 HFEMLERCLTGYPLAINATDIKVKEV 307
           H E L   L G  +  N  +I VKE+
Sbjct: 295 HHEALTEALPGDNVGFNVKNISVKEL 320


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = +2

Query: 197 YNNETNYPQYAHFEMLERCLTGYPLAINATDIKVKEVDFNPEFISRVIPKLD 352
           Y+N   +PQ   F  L      Y   INA ++++ +   +   I     K+D
Sbjct: 303 YSNGVTFPQRNRFSSLPYYKYKYLNVINALEMRLMDAIDSGYLIDEYGKKID 354


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 230 HFEMLERCLTGYPLAINATDIKVKEV 307
           H E L   L G  +  N  +I VKE+
Sbjct: 6   HHEALTEALPGDNVGFNVKNISVKEL 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,042
Number of Sequences: 438
Number of extensions: 4111
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)