Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0043.Seq
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.2  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   7.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   7.4  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 625 LFLFQYY*SI-YQGYCLMSGYIFECI*KNKQIGVPRTF 515
           +++FQ   S    G+CL+    FECI  +   GV R +
Sbjct: 439 MYVFQLLDSYAVSGFCLLFLMFFECIAISWAFGVNRFY 476


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 625 LFLFQYY*SI-YQGYCLMSGYIFECI*KNKQIGVPRTF 515
           +++FQ   S    G+CL+    FECI  +   GV R +
Sbjct: 492 MYVFQLLDSYAVSGFCLLFLMFFECIAISWAFGVNRFY 529


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 15/79 (18%)
 Frame = +2

Query: 413 ALGRWQV*RSRCA*PPH--PP--------RLMRRYRARQVALSGKCAR--NPYLFIFLNT 556
           A+G WQ+    C+ PP   PP        R  R  R   V+   + +R   P  F+ +N 
Sbjct: 381 AMGHWQMSCVACSPPPRQTPPSRKESGRRRRRRTPRYNSVSKIDRASRIVFPLFFLAINV 440

Query: 557 ---FKYVSAHETITLINAS 604
              F Y+S  E I   N +
Sbjct: 441 FYWFAYLSRSERINYYNVN 459


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 219 ESTFFNSGLLFQTGTTLNPI 160
           E  +  SG L+   TT+NPI
Sbjct: 307 EWLYILSGCLYYFSTTINPI 326


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 536 LFIFLNTFKYVSAHETITLINAS 604
           LF+ L+ F  V   ETI  +N++
Sbjct: 605 LFLLLDMFNCVVVEETIPSLNST 627


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,347
Number of Sequences: 438
Number of extensions: 3683
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)