SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0026
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    26   0.37 
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    26   0.37 
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    26   0.37 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    26   0.37 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.48 
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.6  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.6  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   6.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   6.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   6.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.0  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = -3

Query: 245 HYCFTAELGRVVVPTRADSQDVLPPVIMQTITLRV*FLLHDVIFLHRVLRTQY*VY*KLK 66
           +Y F   +  V++ + A     LPP   + +TL V  LL   +FL+ V  T   V   + 
Sbjct: 196 YYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAETLPQVSDAIP 255

Query: 65  M--TYFRWIVFM 36
           +  +YF  I+FM
Sbjct: 256 LLGSYFNCIMFM 267


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = -3

Query: 245 HYCFTAELGRVVVPTRADSQDVLPPVIMQTITLRV*FLLHDVIFLHRVLRTQY*VY*KLK 66
           +Y F   +  V++ + A     LPP   + +TL V  LL   +FL+ V  T   V   + 
Sbjct: 196 YYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAETLPQVSDAIP 255

Query: 65  M--TYFRWIVFM 36
           +  +YF  I+FM
Sbjct: 256 LLGSYFNCIMFM 267


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = -3

Query: 245 HYCFTAELGRVVVPTRADSQDVLPPVIMQTITLRV*FLLHDVIFLHRVLRTQY*VY*KLK 66
           +Y F   +  V++ + A     LPP   + +TL V  LL   +FL+ V  T   V   + 
Sbjct: 196 YYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAETLPQVSDAIP 255

Query: 65  M--TYFRWIVFM 36
           +  +YF  I+FM
Sbjct: 256 LLGSYFNCIMFM 267


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = -3

Query: 245 HYCFTAELGRVVVPTRADSQDVLPPVIMQTITLRV*FLLHDVIFLHRVLRTQY*VY*KLK 66
           +Y F   +  V++ + A     LPP   + +TL V  LL   +FL+ V  T   V   + 
Sbjct: 264 YYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAETLPQVSDAIP 323

Query: 65  M--TYFRWIVFM 36
           +  +YF  I+FM
Sbjct: 324 LLGSYFNCIMFM 335


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = -3

Query: 245 HYCFTAELGRVVVPTRADSQDVLPPVIMQTITLRV*FLLHDVIFLHRVLRTQY*VY*KLK 66
           +Y F   +  V++ + A     LPP   + ++L V  LL   +FL+ V  T       + 
Sbjct: 233 YYFFNLIVPCVLIASMAVLGFTLPPDSGEKLSLGVTILLSLTVFLNMVAETMPATSDAVP 292

Query: 65  M--TYFRWIVFM 36
           +  TYF  I+FM
Sbjct: 293 LLGTYFNCIMFM 304


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = -3

Query: 245 HYCFTAELGRVVVPTRADSQDVLPPVIMQTITLRV*FLLHDVIFLHRVLRTQY*VY*KLK 66
           +Y F   +  V++ + A     LPP   + +TL V  LL   +FL+ V  +       + 
Sbjct: 196 YYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVP 255

Query: 65  M--TYFRWIVFM 36
           +  +YF  I+FM
Sbjct: 256 LIGSYFNCIMFM 267


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = -3

Query: 245 HYCFTAELGRVVVPTRADSQDVLPPVIMQTITLRV*FLLHDVIFLHRVLRTQY*VY*KLK 66
           +Y F   +  V++ + A     LPP   + +TL V  LL   +FL+ V  +       + 
Sbjct: 196 YYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVP 255

Query: 65  M--TYFRWIVFM 36
           +  +YF  I+FM
Sbjct: 256 LIGSYFNCIMFM 267


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = -3

Query: 245 HYCFTAELGRVVVPTRADSQDVLPPVIMQTITLRV*FLLHDVIFLHRVLRTQY*VY*KLK 66
           +Y F   +  V++ + A     LPP   + +TL V  LL   +FL+ V  +       + 
Sbjct: 196 YYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVP 255

Query: 65  M--TYFRWIVFM 36
           +  +YF  I+FM
Sbjct: 256 LIGSYFNCIMFM 267


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = -3

Query: 245 HYCFTAELGRVVVPTRADSQDVLPPVIMQTITLRV*FLLHDVIFLHRVLRTQY*VY*KLK 66
           +Y F   +  V++ + A     LPP   + +TL V  LL   +FL+ V  +       + 
Sbjct: 264 YYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVP 323

Query: 65  M--TYFRWIVFM 36
           +  +YF  I+FM
Sbjct: 324 LIGSYFNCIMFM 335


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 548 YLISHAKIQFYIKIQWNGWTTTLQIN 471
           YLI +  I   IK+ W G  + L+++
Sbjct: 237 YLIKNQTITCPIKVSWRGNYSCLKVD 262


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 548 YLISHAKIQFYIKIQWNGWTTTLQIN 471
           YLI +  I   IK+ W G  + L+++
Sbjct: 288 YLIKNQTITCPIKVSWRGNYSCLKVD 313


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 548 YLISHAKIQFYIKIQWNGWTTTLQIN 471
           YLI +  I   IK+ W G  + L+++
Sbjct: 237 YLIKNQTITCPIKVSWRGNYSCLKVD 262


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/26 (30%), Positives = 19/26 (73%)
 Frame = -2

Query: 645 ITFIIL*HLIVPIGNIIYINLFKIQI 568
           + FI+   L++ +G ++YI++FK ++
Sbjct: 184 VVFIVS-GLLMLVGMVMYISVFKAEV 208


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 467 NYLSAVWLSNHSIGFLCKIVFSHVRLN 547
           N+   +   NHS  +L  I+FSH   N
Sbjct: 222 NHARLMSQDNHSKEYLVSIMFSHYDRN 248


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,411
Number of Sequences: 438
Number of extensions: 3844
Number of successful extensions: 18
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -