Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0001
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   3.8  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   3.8  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   3.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   3.8  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   5.0  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   6.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   6.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.8  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 119 TVILVWV*SAARKSPL 166
           T++LVW  SAA  SP+
Sbjct: 306 TILLVWAISAAIGSPI 321


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +1

Query: 439 TLPLPRHMP 465
           TLPLP+H+P
Sbjct: 503 TLPLPQHLP 511


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +1

Query: 439 TLPLPRHMP 465
           TLPLP+H+P
Sbjct: 418 TLPLPQHLP 426


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +1

Query: 439 TLPLPRHMP 465
           TLPLP+H+P
Sbjct: 737 TLPLPQHLP 745


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +3

Query: 261 CKVTGKCGSVTVRLIPAPRGT 323
           C + G CG +   +   P+GT
Sbjct: 75  CPICGACGDIAHTVKYCPKGT 95


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -1

Query: 350 LRNWRRHNTSTTRGRNQPDCYGTTLAGDLARDV 252
           LRNW   N + T        YG ++    A+D+
Sbjct: 187 LRNWFSKNVNQTVAETVRIIYGGSVTAGNAKDL 219


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +1

Query: 448 LPRHMPTSL 474
           LP+H+PTSL
Sbjct: 379 LPKHLPTSL 387


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = -1

Query: 314 RGRNQPDCYGTTLAGDLARDVCGFPILLP 228
           RG  QPD       G    DV G   +LP
Sbjct: 28  RGNPQPDIIWVRADGSAVGDVPGLRQVLP 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,603
Number of Sequences: 438
Number of extensions: 3871
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)