SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30013
         (335 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   0.75 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   0.75 
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   0.99 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   1.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   2.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   4.0  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   4.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   4.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   5.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   5.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   5.3  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 0.75
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 218 FRSWRGVVLGRAGRAAIC*DSALRQVIRPR 307
           F +  G +L +  R A   DSA R  +RPR
Sbjct: 591 FSAVYGALLTKTNRIARIFDSASRTAVRPR 620


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 0.75
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 218 FRSWRGVVLGRAGRAAIC*DSALRQVIRPR 307
           F +  G +L +  R A   DSA R  +RPR
Sbjct: 681 FSAVYGALLTKTNRIARIFDSASRTAVRPR 710


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.0 bits (47), Expect = 0.99
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 228 GGVLCSVEQVVLRSVETQP 284
           G V+CS+ Q ++  +ET P
Sbjct: 163 GSVVCSLPQTIVFHLETHP 181


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 11/57 (19%), Positives = 26/57 (45%)
 Frame = -3

Query: 306  LGRITWRRAESQQIAARPALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKK 136
            +GR +   A +  ++  P  P   PR   ++++ +++ +   E+      RD  V +
Sbjct: 1840 VGRRSVGSARNIPVSGSPEPPPPPPRNHDQNNSSFNDSKESNEISEAECDRDQLVNR 1896


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = -2

Query: 298 NHLAQG*VSTDRSTTCSTEHNTPPGTEVVYRLFRAPTSN*VISGPSEP 155
           +  A G  + D S   ST+ +TP            P ++   +GP+ P
Sbjct: 194 DEFANGGAARDESKAGSTDASTPATVTTTGATTTLPAASATGTGPATP 241



 Score = 20.2 bits (40), Expect = 7.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 46   CDFTSRVSHSKRETRRRSP 102
            CD    V HS ++T+++ P
Sbjct: 1487 CDSKLIVDHSSQKTQQQQP 1505



 Score = 19.8 bits (39), Expect = 9.2
 Identities = 6/26 (23%), Positives = 14/26 (53%)
 Frame = -3

Query: 234  PRQERKSSTDYSEPRHRTELYPDLRS 157
            P+Q+++      + + +   YPDL +
Sbjct: 1450 PQQQQQQQQQQQQQQQQLNHYPDLHN 1475


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = -3

Query: 240 TTPRQERKSST 208
           TTP++ERK++T
Sbjct: 789 TTPKKERKTAT 799


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 107 DRGDRCYRFFFLTRAS 154
           DRG + Y +FF  R S
Sbjct: 469 DRGMKVYYYFFTQRTS 484


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 107 DRGDRCYRFFFLTRAS 154
           DRG + Y +FF  R S
Sbjct: 469 DRGMKVYYYFFTQRTS 484


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -3

Query: 234 PRQERKSSTDYSEPRHRTELYPD 166
           PR+ R+  T+Y E R++ + + +
Sbjct: 405 PREMRQRITEYFEHRYQGKFFDE 427


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -3

Query: 234 PRQERKSSTDYSEPRHRTELYPD 166
           PR+ R+  T+Y E R++ + + +
Sbjct: 373 PREMRQRITEYFEHRYQGKFFDE 395


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 227 RNGSRLQTIPSPDIEL 180
           RNG+ L+T+  P+I +
Sbjct: 346 RNGADLETLNEPEIRV 361


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,699
Number of Sequences: 438
Number of extensions: 1694
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)

- SilkBase 1999-2023 -