Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_D03
         (348 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   1.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   1.8  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   1.8  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   1.8  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = +1

Query: 118 DIKNYLEKIYEVPVVDVRTKINMGKFKKDVVKGYVIKEDDVKVAFVTLPK 267
           D+K  LE + E  ++D    I  GK    +++   +K+  + V+ +   K
Sbjct: 311 DLKGDLEGLVEGVIIDCSNHIGRGKLVTALIQRGTLKKGCLLVSGIASAK 360


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 80  MLGSCFGCG 54
           MLGS FGCG
Sbjct: 130 MLGSLFGCG 138


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 80  MLGSCFGCG 54
           MLGS FGCG
Sbjct: 96  MLGSLFGCG 104


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
          rhodopsin protein.
          Length = 154

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 80 MLGSCFGCG 54
          MLGS FGCG
Sbjct: 6  MLGSLFGCG 14


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,331
Number of Sequences: 438
Number of extensions: 1504
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)