Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a10f
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.46 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   1.8  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   7.4  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   9.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 213 GCGSAHTPRAAPGLGYTLLLTARPTPPATAEFSQSATTSAS 91
           G    H P ++  L  T+  T   T   TA  + +ATT+A+
Sbjct: 90  GSRPLHPPASSTSLPATITTTTTTTTTTTATAAATATTTAT 130


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 190 ARRPRTWIYLATHGEADAP 134
           + RP  W + AT  EA AP
Sbjct: 24  SHRPAWWFWTATSHEASAP 42


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = +2

Query: 158 SKVYPSPGAARGVWALPQPPPCTMAAEESLPQGSPMSPDAPVAPPRTITS 307
           SK+     A R +  L Q   C M   E     S  +P + V   R ITS
Sbjct: 289 SKIQTLKLATRYIDFLFQVLHCNMENTEGADDASERNPRSAVLAAREITS 338


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 25 IVLCKKNQNLNL 60
          I LC K +NLNL
Sbjct: 24 ITLCLKQENLNL 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,585
Number of Sequences: 438
Number of extensions: 5226
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)