Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0039
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.90 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +2

Query: 470 RYTRSCDVLRACCC*GDRSRCSLRCTCGC 556
           RY   C  L   CC  D   C + C  GC
Sbjct: 738 RYEAHCFAL-CHCCDFDACDCEMTCPAGC 765


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = -3

Query: 267  LVQQHKRRQEQQWS**RLEQHRRQRCGHRER 175
            +VQQ +++Q+QQ    + +Q ++Q+  H+ R
Sbjct: 1207 MVQQQQQQQQQQQQQQQQQQQQQQQQQHQAR 1237



 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 555  QPQVQRKLQRERSP*QQQ 502
            QPQ Q++ Q+++ P QQQ
Sbjct: 1530 QPQQQQQQQQQQQPQQQQ 1547



 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 555 QPQVQRKLQRERSP*QQQARSTSQLRV*RG 466
           QPQ Q++ Q+++ P QQQ +   Q +  RG
Sbjct: 829 QPQQQQQ-QQQQQPQQQQQQQQQQQQQQRG 857



 Score = 21.4 bits (43), Expect = 8.4
 Identities = 12/52 (23%), Positives = 23/52 (44%)
 Frame = -3

Query: 387  SKKILRKQLEKWSWSQPEMRHKRTMVQRRTNMLGQ*HMSMLVQQHKRRQEQQ 232
            SK I+    +K    QP+ + ++   Q+      Q        Q +++Q+QQ
Sbjct: 1489 SKLIVDHSSQKTQQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQ 1540


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -3

Query: 276  MSMLVQQHKRRQEQQWS 226
            M   V +HK++ +Q+W+
Sbjct: 1491 MIYFVVEHKKKNQQEWN 1507


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 558 RQPQVQRKLQRERSP*QQQARSTSQ 484
           +QPQ Q++ Q+++   QQQ +   Q
Sbjct: 438 QQPQQQQQQQQQQQQQQQQQQQQQQ 462


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,086
Number of Sequences: 438
Number of extensions: 2836
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)