Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0028
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.68 
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    24   1.6  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    24   1.6  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    24   1.6  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    24   1.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   4.8  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +2

Query: 437 FYSFSQRIVVH*IPASAKPRHQSRSCETCNRSSDRL--VRALP 559
           F+SF Q  ++   P++ +PRH+ RS +    + + +  V+ +P
Sbjct: 506 FFSFHQWGILVYEPSACRPRHEIRSTDVIPGTQEHVCGVKGIP 548


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 345 LELNDAFKISSQNEQLAWAEWNSSNLYQKHDSTWKGKIR 229
           LE   + K  S++ +     + + N Y+K+  TWK + R
Sbjct: 30  LEERTSRKRYSRSREREQKSYKNENSYRKYRETWKERSR 68


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 345 LELNDAFKISSQNEQLAWAEWNSSNLYQKHDSTWKGKIR 229
           LE   + K  S++ +     + + N Y+K+  TWK + R
Sbjct: 30  LEERTSRKRYSRSREREQKSYKNENSYRKYRETWKERSR 68


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 345 LELNDAFKISSQNEQLAWAEWNSSNLYQKHDSTWKGKIR 229
           LE   + K  S++ +     + + N Y+K+  TWK + R
Sbjct: 30  LEERTSRKRYSRSREREQKSYKNENSYRKYRETWKERSR 68


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 345 LELNDAFKISSQNEQLAWAEWNSSNLYQKHDSTWKGKIR 229
           LE   + K  S++ +     + + N Y+K+  TWK + R
Sbjct: 30  LEERTSRKRYSRSREREQKSYKNENSYRKYRETWKERSR 68


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 538 PPCESPTHAMTFNMAVTRREFF 603
           P C  P   +TFN+ + R+  F
Sbjct: 230 PCCTEPYSDITFNITMRRKTLF 251


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,481
Number of Sequences: 438
Number of extensions: 3708
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)