Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0016
         (532 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.6  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   4.5  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   5.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   5.9  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   7.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   7.9  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 147 SSPYSVFQKTTPYCIRTKNYV*LYQIF 67
           SSP S F   +P  + ++NY  +  +F
Sbjct: 94  SSPSSFFSSVSPTSLGSENYTGISDLF 120


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 332 WACSGVNGVFGGCWA 288
           W  SG+N V   CW+
Sbjct: 380 WINSGMNPVIYACWS 394


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 249 CNTSSVCSFKFVNFVI 202
           CN  + C F F+N ++
Sbjct: 143 CNFKAYCLFSFLNTIV 158


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -3

Query: 164 PLFFKIPVPTVFFKKRRLIVLEQR 93
           PLF  I V    F   R IVLE+R
Sbjct: 214 PLFVMIQVYYKIFCAARRIVLEER 237


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 39  KFLEYTYLFKIFGKV 83
           K LEY + FK+ G V
Sbjct: 397 KCLEYLFFFKMIGDV 411


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 39  KFLEYTYLFKIFGKV 83
           K LEY + FK+ G V
Sbjct: 397 KCLEYLFFFKMIGDV 411


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,673
Number of Sequences: 438
Number of extensions: 3291
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)